Skeptical thinking
Third year bachelor – Computer science 2014→
Second year master – Journalist and scientist 2013→
Coding and information theory
Second year bachelor – Computer science 2010→
Automata and languages
Third year bachelor – Computer science 2015→
First year master – Biology and biotechnology 2011→
First year bachelor – Hard sciences 2014→2015
C programming
Second year bachelor – Computer science 2013→2015
Third year bachelor – Computer science 2010→2013
Introduction to programming
First year bachelor 2010→2014


Research interests

My research interests are mainly (but not restricted to) the following ones
Algorithms for processing read sequences from high-throughput sequencing technologies. More specifically, algorithms for RNA-Seq data, or for the analysis of lymphocyte clonality.
Searching microRNA targets (microRNAs are small non-protein coding RNAs, that have a regulatory role).
Dynamic compressed text indexes (suffix tree, suffix array, Burrows-Wheeler transform)
Range minimum query


Talks given


A software for clustering sequences sharing the same V(D)J recombination in high-throughput sequencing data. That software can especially be used in leukemia follow-up.
A RNA-seq read analysis tool: for detecting splicing junctions (either alternative or not), fusion gene or transcripts, point mutations (substitutions, insertions, deletions).
A C++ library for indexing reads produced by high-throughput sequencers
A dynamic and compressed full-text index implementation

Conflicts of interest

I own the minimal number of shares of my cooperative bank. My research are exclusively funded by public funds. Within the Vidjil project, I also work with an engineer funded by the fondation EDF. I have signed a non-paid speaker contract with Novartis for a 2-day workshop in 2016 on onco-hematology with medical doctors from hospitals in the north of France. Novartis paid for a hotel room (one night) and for the meals (three).


Université Lille 1 – LIFL
Bâtiment M3 – Cité scientifique
59655 Villeneuve d'Ascq Cedex - France

+33 3 28 77 85 54

  1. 1 If you don't understand that gibberish, do not worry! It is only there not to upset my research group parent organisms.