@comment{{This file has been generated by bib2bib 1.94}}
@comment{{Command line: bib2bib -oc cite2005 -ob 2005.bib 2005.bib}}
@inproceedings{BouvelGrebinskiKucherovWG05,
author = {Bouvel, M. and Grebinski, V. and Kucherov, G.},
title = {Combinatorial search on graphs motivated by bioinformatics applicaitons: a brief survey},
booktitle = {Proceedings of the 31st International Workshop on
Graph-Theoretic Concepts in Computer Science (WG), Metz (France), June 23-25, 2005},
pages = {16--27},
year = {2005},
editor = {Kratsch, D.},
volume = {3787},
series = {Lecture Notes in Computer Science},
publisher = {Springer Verlag},
doi = {doi:10.1007/11604686},
url = {http://www.springerlink.com/content/7715g48783482846/},
pdf = {http://www.springerlink.com/content/7715g48783482846/fulltext.pdf}
}
@inproceedings{Giraud05:cible,
author = {Mathieu Giraud and Pascale Quignon and {\'E}lodie Retout
and Emmanuelle Morin and Anne-Sophie Valin and
Dominique Lavenier and Maud Rimbault and Francis
Galibert and Jacques Nicolas},
title = {Assemblage cibl{\'e} : recherche d'une famille de g{\`e}nes
sur un g{\'e}nome non assembl{\'e}},
booktitle = {Journ{\'e}es Ouvertes Biologie Informatique
Math{\'e}matiques (JOBIM 2005)},
year = 2005
}
@inproceedings{Giraud05:majecstic,
author = {Mathieu Giraud and Laurent No{\'e} and Gregory Kucherov
and Dominique Lavenier},
title = {Recherches de motifs et de similarit{\'e}s en
bioinformatique : mod{\'e}lisations, solutions
logicielles et mat{\'e}rielles},
booktitle = {MajecSTIC},
year = 2005
}
@inproceedings{Tempel05:jobim,
author = {S{\'e}bastien Tempel and Mathieu Giraud and Isra\"el-C{\'e}sar
Lerman and Ivab Cou{\'e}e and Abdelhak El Amrani and
Jacques Nicolas},
title = {Domain Organization within repeated {DNA} sequences
: Application to the study of a new family of
transposable elements in Arabidopsis thaliana},
booktitle = {poster pour JOBIM 2005},
year = 2005
}
@inbook{Lavenier05:springer,
author = {Dominique Lavenier and Mathieu Giraud},
editor = {Maya B. Gokhale and Paul S. Graham},
title = {Reconfigurable Computing},
titlecite = {Reconfigurable Computing \cite{Gokhale05:springer}},
chapter = {Bioinformatics Applications},
publisher = {Springer},
year = 2005,
doi = {10.1007/0-387-26106-0_8},
url = {http://www.springerlink.com/content/u67454g462252nu2/},
pdf = {http://dx.doi.org/10.1007/0-387-26106-0_8}
}
@article{Guyetant05:pc,
author = {St{\'e}phane Guyetant and Mathieu Giraud and Ludovic
L'Hours and Steven Derrien and St{\'e}phane Rubini and
Dominique Lavenier and Fr{\'e}d{\'e}ric Raimbault},
title = {Cluster of Re-configurable Nodes for Scanning Large
Genomic Banks},
journal = {Parallel Computing},
year = 2005,
volume = 31,
number = 1,
pages = {73--96},
doi = {10.1016/j.parco.2004.12.005},
url = {http://dx.doi.org/10.1016/j.parco.2004.12.005}
}
@article{Quignon05:or,
author = {Pascale Quignon and Mathieu Giraud and Maud Rimbault
and Patricia Lavigne and Sandrine Tacher and
Emmanuelle Morin and {\'E}lodie Retout and Anne-Sophie
Valin and Kerstin Lindblad-Toh and Jacques Nicolas
and Francis Galibert},
title = {The dog and rat olfactory receptor repertoires},
journal = {Genome Biology},
volume = 6,
year = 2005,
number = 10,
pages = {R83},
doi = {10.1186/gb-2005-6-10-r83},
url = {http://genomebiology.com/2005/6/10/R83},
pdf = {http://dx.doi.org/10.1186/gb-2005-6-10-r83}
}
@article{Giraud05:jalc,
author = {Mathieu Giraud and Dominique Lavenier},
title = {Dealing with hardware space limits when removing
epsilon-transitions in a genomic weighted finite
automaton},
journal = {Journal of Automata, Languages and Combinatorics},
volume = {10},
number = {2/3},
year = {2005},
postscript = {http://www.lifl.fr/~giraud/publis/jalc-preprint.ps.gz}
}
@inproceedings{CPM05,
title = {A linear tree edit distance algorithm for similar ordered trees},
author = {Touzet, H.},
booktitle = {(CPM)},
series = {Lecture Notes in Computer Science},
publisher = {Springer Verlag},
volume = {3537},
pages = {334-345},
year = {2005},
doi = {10.1186/gb-2005-6-10-r83},
url = {http://www.springerlink.com/content/jmh4t77ge4ach0y0/},
pdf = {http://www.lifl.fr/~touzet/Publications/cpm05touzet.pdf}
}
@inproceedings{FT05,
title = {How to detect non-coding {RNA}s ?},
author = {Fontaine, A. and Touzet, H.},
booktitle = {{JOBIM}},
pdf = {http://www.lifl.fr/~touzet/Publications/detection.pdf},
year = {2005}
}
@article{DT05,
title = {Decomposition algorithms for the tree edit distance problem},
author = {Dulucq S. and Touzet H.},
journal = {Journal of Discrete Algorithms},
volulme = {3(2-4)},
year = {2005},
pages = {448-471},
doi = {10.1016/j.jda.2004.08.018},
url = {http://linkinghub.elsevier.com/retrieve/pii/S1570866704000656},
pdf = {http://www.lifl.fr/~touzet/Publications/touzetdulucq.pdf}
}
@phdthesis{touzet:hdr,
title = {Structures combinatoires pour l'analyse de g{\'e}nomes},
author = {Touzet, H.},
school = {Universit\'e des Sciences et Technologies de Lille},
year = {2005},
pdf = {http://www.lifl.fr/~touzet/Publications/hdrtouzet.pdf}
}
@inproceedings{KucherovNoeRoytbergWABI05,
author = {Kucherov, G. and No{\'e}, L. and Roytberg, M.},
title = {A unifying framework for seed sensitivity and its application to subset seeds},
booktitle = {Proceedings of the 5th International Workshop in Algorithms in Bioinformatics (WABI), Mallorca (Spain)},
pages = {251--263},
year = {2005},
editor = {Casadio, R and Myers, G},
volume = {3692},
series = {Lecture Notes in Computer Science},
publisher = {Springer Verlag},
url = {http://www.springerlink.com/content/72384x40t0v2j254/},
pdf = {http://www.lifl.fr/~noe/files/pp_WABI05.pdf},
postscript = {http://www.lifl.fr/~noe/files/pp_WABI05.ps.gz},
doi = {10.1007/11557067_21}
}
@article{NoeKucherovNAR05,
author = {No{\'e}, L. and Kucherov, G.},
title = {{YASS}: enhancing the sensitivity of {DNA} similarity search},
journal = {Nucleic Acids Research},
year = {2005},
volume = {33 (web-server issue)},
pages = {W540--W543},
doi = {10.1093/nar/gki478},
pdf = {http://nar.oxfordjournals.org/cgi/reprint/33/suppl_2/W540.pdf},
url = {http://nar.oxfordjournals.org/cgi/content/short/33/suppl_2/W540}
}
@article{KucherovNoeRoytbergTCBB05,
author = {Kucherov, G. and No{\'e}, L. and Roytberg, M.},
title = {Multiseed lossless filtration},
journal = {IEEE Transactions on Computational Biology and Bioinformatics (TCBB)},
pages = {51 -- 61},
year = {2005},
volume = {2},
number = {1},
doi = {10.1109/TCBB.2005.12},
url = {http://doi.ieeecomputersociety.org/10.1109/TCBB.2005.12},
pdf = {http://www.lifl.fr/~noe/files/pp_TCBB05_preprint.pdf},
postscript = {http://www.lifl.fr/~noe/files/pp_TCBB05_preprint.ps.gz}
}
@phdthesis{NoePHD05,
author = {No{\'e},L},
title = {Recherche de similarit{\'e}s dans les s{\'e}quences d'ADN:
mod{\`e}les et algorithmes pour la conception de graines efficaces},
school = {Universit{\'e} Henri Poincar{\'e} - Nancy},
year = {2005},
pdf = {http://www.lifl.fr/~noe/files/phd.pdf},
postscript = {http://www.lifl.fr/~noe/files/phd.ps.gz}
}
@article{cvl+05,
title = {Evolution of plant-like crystalline storage polysaccharide in the protozoan parasite Toxoplasma gondii argues for a red alga ancestry},
author = {Coppin, A. and Varr{\'e}, J.-S. and Lienard, L. and Dauvill{\'e}e, D. and Gu{\'e}rardel, Y. and Soyer-Gobillard, M.-O.and Bul{\'e}on, A. and Ball, S. and Tomavo, S.},
journal = {Journal of Molecular Evolution},
volume = {60},
number = {2},
pages = {257-267},
year = {2005},
doi = {10.1007/s00239-004-0185-6},
url = {http://www.springerlink.com/content/g25w0m32tl617376/},
pdf = {http://www.springerlink.com/content/g25w0m32tl617376/fulltext.pdf}
}
This file was generated by bibtex2html 1.94.