@comment{{This file has been generated by bib2bib 1.94}}
@comment{{Command line: bib2bib -oc cite2008 -ob 2008.bib 2008.bib}}
@article{PeterlongoEtAlBMC08,
author = {Pierre Peterlongo and Laurent No{\'e} and Dominique Lavenier and Van Hoa Nguyen and Gregory Kucherov and Mathieu Giraud},
inria = {Sequoia},
labo = {dans},
journal = {BMC Bioinformatics},
title = {Optimal neighborhood indexing for protein similarity search},
x-editorial-board = {yes},
x-international-audience = {yes},
number = {534},
volume = {9},
doi = {10.1186/1471-2105-9-534},
pdf = {http://www.biomedcentral.com/content/pdf/1471-2105-9-534.pdf},
url = {http://www.biomedcentral.com/1471-2105/9/534},
year = {2008}
}
@phdthesis{Liefooghe08:phd,
author = {Aude Liefooghe},
title = {Matrices score-position, algorithmes et propri\'et\'es},
school = {Universit\'e de Lille 1},
year = {2008}
}
@phdthesis{Varre08:habil,
author = {Jean-St\'ephane Varr\'e},
title = {Algorithmes pour la comparaison de g\'enomes et la recherche de signaux cis-r\'egulateurs},
school = {Universit\'e de Lille 1},
type = {Habilitation \`a Diriger des Recherches},
year = {2008}
}
@article{BlinDeniseDulucqHerrbachTouzetTCBB08,
title = {Alignment of {RNA} structures},
author = {Guillaume Blin and Alain Denise and Serge Dulucq and Claire Herrbach and H\'el\`ene Touzet},
journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics},
year = {2008},
pdf = {http://ieeexplore.ieee.org/xpl/preabsprintf.jsp?arnumber=4459307},
doi = {10.1109/TCBB.2008.28},
aeres = {ACL},
x-editorial-board = {yes},
x-international-audience = {yes},
selectif = {oui},
labo = {dans},
inria = {SEQUOIA}
}
@article{FontaineDeMonteTouzetNAR08,
title = {{MAGNOLIA}: multiple alignment of protein-coding and structural {RNA} sequences},
author = {Arnaud Fontaine and Antoine de Monte and H\'el\`ene Touzet},
journal = {Nucleic Acids Research },
year = {2008},
volume = {Web Server Issue, Vol 36},
number = {suppl 2},
pages = {W14-W18},
url = {http://nar.oxfordjournals.org/cgi/content/full/gkn321},
pdf = {http://nar.oxfordjournals.org/cgi/reprint/36/suppl_2/W14.pdf},
doi = {10.1093/nar/gkn321},
x-editorial-board = {yes},
x-international-audience = {yes},
aeres = {ACL},
selectif = {oui},
labo = {dans},
inria = {SEQUOIA}
}
@article{TouzetJME08,
title = {{Does hybridization increase evolutionary rate ? Data from the 28S-rDNA D8 domain in echinoderms}},
author = {Anne Chenuil and Emilie Egea and Caroline Rocher and H\'el\`ene Touzet and Jean-Pierre F\'eral},
journal = {Journal of Molecular Evolution},
volume = {67},
number = {5},
pages = {539-550},
year = {2008},
doi = {10.1007/s00239-008-9171-8},
url = {http://www.springerlink.com/content/526u861u76128q27/fulltext.html},
pdf = {http://www.springerlink.com/content/526u861u76128q27/fulltext.pdf},
aeres = {ACL},
x-editorial-board = {yes},
x-international-audience = {yes},
selectif = {oui},
labo = {dans},
inria = {SEQUOIA}
}
@inproceedings{RoytbergEtAlALBIO08,
author = {Roytberg, M. and Gambin, A. and No{\'e}, L. and
Lasota, S. and Furletova, E. and Szczurek, E. and
Kucherov, G.},
title = {Efficient seeding techniques for protein similarity
search},
booktitle = {Proceedings of the 2nd Workshop on Algorithms in
Molecular Biology (ALBIO'08), Vienna (Austria), July
7-9, 2008},
year = 2008,
publisher = {Springer Verlag},
pages = {466--478},
editor = {Elloumi, M and K\"{u}ng, J. and Linial, M. and Murphy, R.F. and Schneider, K. and Toma, C.},
volume = {13},
series = {Communications in Computer and Information Science},
pdf = {http://www.lifl.fr/~noe/files/pp_ALBIO08.pdf},
postscript = {http://www.lifl.fr/~noe/files/pp_ALBIO08.ps.gz},
doi = {10.1007/978-3-540-70600-7_36},
url = {http://www.springerlink.com/content/m3560l36r573xjr5/},
aeres = {ACT},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
selectif = {non},
labo = {dans},
inria = {SEQUOIA}
}
@inproceedings{Giraud08:lata,
author = {Mathieu Giraud},
booktitle = {Int. Conf. on Language and Automata Theory and Applications (LATA 08)},
aeres = {ACT},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
inria = {Sequoia},
labo = {dans},
selectif = {oui},
series = {Lecture Notes in Computer Science (LNCS)},
title = {Not so many runs in strings},
doi = {10.1007/978-3-540-88282-4_22},
url = {http://www.lifl.fr/~giraud/publis/giraud-lata-08.pdf},
volume = {5196},
pages = {232--239},
year = {2008}
}
@inproceedings{KolpakovKucherovCPM08,
author = {Kolpakov, R. and Kucherov, G.},
title = {Searching for gapped palindromes},
booktitle = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching (CPM), June 18-20, 2008, Pisa (Italy)},
pages = {18--30},
year = 2008,
volume = 5029,
series = {Lecture Notes in Computer Science},
publisher = {Springer Verlag},
pdf = {http://www.lifl.fr/~kucherov/PAPERS/KolpakovKucherovCPM08.pdf},
url = {http://www.springerlink.com/content/v45825l304h45533/},
doi = {10.1007/978-3-540-69068-9_5},
aeres = {ACT},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
selectif = {oui},
labo = {dans},
inria = {SEQUOIA}
}
@inproceedings{SYMPHOR2008a,
author = {Jean-\'Emile Symphor and Alban Mancheron and Lionel
Vinceslas and Pascal Poncelet},
title = {{Le \textsc{fia} : un nouvel automate permettant
l'extraction efficace d'\textsl{itemsets} fr\'equents
dans les \textsl{flots de donn\'ees}}},
booktitle = {Proceedings of the 8$^{th}$ Extraction et Gestion des Connaissances (\textsc{egc})},
pages = {157--168},
year = {2008},
publisher = {C\'epadu\`es-\'Editions},
series = {Revue des Nouvelles Technologies de l'Information},
volume = {RNTI-E-11 (1)},
isbn = {978-2-85428-818-6},
pdf = {http://www.lgi2p.ema.fr/~poncelet/publications/papers/SymphorEGC087.pdf},
x-editorial-board = {yes},
x-international-audience = {no},
x-proceedings = {yes}
}
@inproceedings{G08a,
author = {S. Guillemot},
title = {{Parameterized complexity and approximability of the SLCS problem}},
booktitle = {Proceedings of Parameterized and Exact Computation: Third International Workshop (IWPEC 2008)},
series = {Lecture Notes in Computer Science},
volume = {5018},
pages = {115--128},
year = {2008},
doi = {10.1007/978-3-540-79723-4_12},
pdf = {http://www.lirmm.fr/~sguillem/publis/SLCS.pdf},
url = {http://www.springerlink.com/content/qqm6mp6hn6np4147/},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes}
}
@inproceedings{G08b,
author = {S. Guillemot},
title = {{FPT algorithms for path-transversals and cycle-transversals problems in graphs}},
booktitle = {Proceedings of Parameterized and Exact Computation: Third International Workshop (IWPEC 2008)},
series = {Lecture Notes in Computer Science},
volume = {5018},
pages = {129--140},
year = {2008},
doi = {10.1007/978-3-540-79723-4_13},
pdf = {http://www.lirmm.fr/~sguillem/publis/HPS.pdf},
url = {http://www.springerlink.com/content/1621103545417h7n/},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes}
}
@inproceedings{G08c,
author = {J. Byrka and S. Guillemot and J. Jansson},
title = {{New Results on Optimizing Rooted Triplets Consistency}},
year = {2008},
series = {Lecture Notes in Computer Science},
booktitle = {Proceedings of the 19th International Symposium on Algorithms and Computation (ISAAC 2008)},
volume = {5369},
pages = {484--495},
doi = {10.1007/978-3-540-92182-0_44},
pdf = {http://www.lirmm.fr/~sguillem/publis/RTC.pdf},
url = {http://www.springerlink.com/content/165qk27gp176x21t/},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes}
}
@inbook{Jansson08:1,
author = {Jesper Jansson and W.-K. Sung},
title = {New Topics in Theoretical Computer Science},
chapter = {The Maximum Agreement of Two Nested Phylogenetic Networks},
publisher = {NOVA Publishers},
x-international-audience = {yes},
year = 2008,
pages = {119-141},
isbn = {978-1-60456-100-5},
optdoi = {},
opturl = {}
}
@inbook{Jansson08:2,
author = {Jesper Jansson},
chapter = {Directed Perfect Phylogeny (Binary Characters) -- 1991; Gusfield},
title = {Encyclopedia of Algorithms},
publisher = {Springer},
x-international-audience = {yes},
year = 2008,
pages = {246-248},
editor = {Kao, Ming-Yang},
isbn = {978-0-387-36061-4},
doi = {10.1007/978-0-387-30162-4_112},
url = {http://www.springerlink.com/content/qx64143355344m57/}
}
@inbook{Jansson08:3,
author = {Jesper Jansson},
chapter = {Perfect Phylogeny (Bounded Number of States) -- 1997; Kannan, Warnow},
title = {Encyclopedia of Algorithms},
publisher = {Springer},
x-international-audience = {yes},
year = 2008,
pages = {644-647},
editor = {Kao, Ming-Yang},
isbn = {978-0-387-36061-4},
doi = {10.1007/978-0-387-30162-4_288},
url = {http://www.springerlink.com/content/p712322k476p6m0t/}
}
@inbook{Jansson08:4,
author = {Jesper Jansson},
chapter = {Phylogenetic Tree Construction from a Distance Matrix -- 1989; Hein},
title = {Encyclopedia of Algorithms},
publisher = {Springer},
x-international-audience = {yes},
year = 2008,
pages = {651-653},
editor = {Kao, Ming-Yang},
isbn = {978-0-387-36061-4},
doi = {10.1007/978-0-387-30162-4_292},
url = {http://www.springerlink.com/content/n6002jk482656404/}
}
@inbook{Kucherov08:ea,
author = {Kucherov, G. and Sokol, D.},
chapter = {Approximate Tandem Repeats},
title = {Encyclopedia of Algorithms},
pages = {48--51},
publisher = {Springer},
x-international-audience = {yes},
year = 2008,
editor = {Kao, Ming-Yang},
isbn = {978-0-387-30770-1},
doi = {10.1007/978-0-387-30162-4_24},
url = {http://www.springerlink.com/content/r7376614263rv3h0/}
}
@inproceedings{GirdeaKucherovNoeJOBIM08Poster,
author = {G{\^i}rdea, M. and Kucherov, G. and No{\'e}, L.},
title = {Protein sequence alignment via anti translation},
booktitle = {Proceedings of the 9th Open Days in Biology, Computer Science and Mathematics (JOBIM), June 30-July 2, 2008, Lille (France)},
year = {2008},
pages = {157--158},
url = {http://www.lifl.fr/~girdea/at/files/jobim044.pdf},
note = {(short talk with poster)},
x-editorial-board = {yes},
x-international-audience = {no},
x-proceedings = {yes}
}
@inproceedings{AllaliJOBIMO8Poster,
title = {Benchmarking {RNA} secondary structure comparison algorithms},
author = {Julien Allali and Yves d'Aubenton-Carafa and C\'edric Chauve and Alain Denise and Christine Drevet and Pascal Ferraro and Daniel Gautheret and Claire Herrbach and Fabrice Leclerc and Antoine de Monte and Aida Ouangraoua and Marie-France Sagot and C\'edric Saule and Michel Termier and Claude Thermes and H\'el\`ene Touzet},
booktitle = {Proceedings of the 9th Open Days in Biology, Computer Science and Mathematics (JOBIM), June 30-July 2, 2008, Lille (France)},
year = {2008},
pages = {67--68},
note = {(short talk with poster)},
pdf = {http://www.labri.fr/publications/mabiovis/2008/ACDDFGHLDOSSTTT08/brasero_bench1_.pdf},
x-editorial-board = {yes},
x-international-audience = {no},
x-proceedings = {yes}
}
@misc{Caboche08:jobim,
author = {Caboche, S{\'e}gol{\`e}ne and Pupin, Maude and Lecl{\`e}re, Val{\'e}rie and Jacques, Philippe and Kucherov, Gregory},
title = {{NORINE}: a platform dedicated to nonribosomal peptides},
year = 2008,
note = {9th Open Days in Biology, Computer Science and Mathematics (JOBIM), June 30-July 2, 2008, Lille (France)},
inria = {SEQUOIA},
x-editorial-board = {yes},
x-international-audience = {no}
}
@misc{Caboche08:embnet,
author = {Caboche, S{\'e}gol{\`e}ne and Pupin, Maude and Lecl{\`e}re, Val{\'e}rie and Jacques, Philippe and Kucherov, Gregory},
title = {{NORINE}: a public resource for nonribosomal peptides},
year = 2008,
note = {EMBnet 2008 - 20th Anniversary Conference},
url = {http://issuu.com/lfalquet/docs/embnet_news_14_3/64},
pdf = {http://www.embnet.org/files/Abstracts-EMBnetConference2008.pdf},
inria = {SEQUOIA},
x-editorial-board = {yes},
x-international-audience = {yes}
}
@misc{Caboche08:eccb,
author = {Caboche, S{\'e}gol{\`e}ne and Pupin, Maude and Lecl{\`e}re, Val{\'e}rie and Jacques, Philippe and Kucherov, Gregory},
title = {{NORINE}: database and efficient algorithms dedicated to nonribosomal peptides},
year = 2008,
note = {ECCB08 European Conference on Computational Biology},
url = {http://www.eccb08.org/themes/default/poster/poster/posters-B.html#8},
inria = {SEQUOIA},
x-editorial-board = {yes},
x-international-audience = {yes}
}
@misc{VarreBERLIN08,
author = {Darracq, A. and Varr{\'e}, J.-S. and Courseaux,
A. and Mar\'echal-Drouard, L. and Touzet, P.},
title = {Evolution of the mitochondrial genome in beet. A
comparative genomic study at the intra-specific
level},
year = 2008,
note = {XX International Congress of Genetics},
aeres = {AFF},
selectif = {non},
labo = {dans},
inria = {SEQUOIA}
}
@inproceedings{VINCESLAS2008,
author = {Lionel Vinceslas and Jean-\'Emile Symphor and Alban
Mancheron and Pascal Poncelet},
title = {{FIASCO} : un nouvel algorithme d'extraction
d'itemsets fr\'equents dans les flots
de donn\'ees},
booktitle = {Proceedings of the 8th Extraction et Gestion des Connaissances (EGC)},
pages = {235--236},
year = {2008},
publisher = {C\'epadu\`es-\'Editions},
series = {Revue des Nouvelles Technologies de l'Information},
volume = {RNTI-E-11 (1)},
isbn = {978-2-85428-818-6},
x-editorial-board = {yes},
x-international-audience = {no},
x-proceedings = {yes}
}
This file was generated by bibtex2html 1.94.