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@comment{{Command line: bib2bib -oc cite2009 -ob 2009.bib 2009.bib}}
@proceedings{CPM09,
title = {Combinatorial Pattern Matching: 20th Annual Symposium (CPM), Lille (France), June 2009. Proceedings},
year = {2009},
editor = {Kucherov, G. and Ukkonen, E.},
volume = {5577},
series = {Lecture Notes in Computer Science},
publisher = {Springer},
doi = {10.1007/978-3-642-02441-2},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-proceedings = {yes},
x-international-audience = {yes},
x-pays = {RU,FI},
aeres = {ACT},
selectif = {oui}
}
@article{KolpakovKucherovTCS09,
author = {Kolpakov, R. and Kucherov, G.},
title = {Searching for gapped palindromes},
journal = {Theoretical Computer Science},
year = {2009},
volume = {410},
number = {51},
pages = {5365--5373},
doi = {10.1016/j.tcs.2009.09.013},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {RU},
aeres = {ACL},
selectif = {oui}
}
@article{CabocheEtAlBMC09,
title = {Structural pattern matching of nonribosomal peptides},
author = {Caboche, S. and Pupin, M. and Lecl{\`e}re, V. and Jacques, Ph. and Kucherov, G.},
journal = {BMC Structural Biology},
year = {2009},
month = {March 18},
volume = {9:15},
doi = {10.1186/1472-6807-9-15},
url = {http://www.biomedcentral.com/1472-6807/9/15},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-proceedings = {yes},
x-international-audience = {yes},
aeres = {ACL},
selectif = {oui}
}
@article{FontaineTouzetIJDMB09,
author = {Arnaud Fontaine and H{\'e}l{\`e}ne Touzet},
title = {Computational identification of protein-coding sequences by comparative analysis},
journal = {International Journal of Data Mining and Bioinformatics},
year = {2009},
pages = {160--176},
volume = {3},
number = {2},
doi = {10.1504/IJDMB.2009.024849},
url = {http://www.inderscience.com/search/index.php?action=record&rec_id=24849},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
aeres = {ACL},
selectif = {oui}
}
@article{RoytbergEtAlTCBB09,
author = {Roytberg, M. and Gambin, A. and No{\'e}, L. and
Lasota, S. and Furletova, E. and Szczurek, E. and
Kucherov, G.},
title = {On subset seeds for protein alignment},
journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics},
year = {2009},
pages = {483--494},
volume = {6},
number = {3},
doi = {10.1109/TCBB.2009.4},
url = {http://www.lifl.fr/~noe/files/pp_TCBB09_preprint.pdf},
postscript = {http://www.lifl.fr/~noe/files/pp_TCBB09_preprint.ps.gz},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {RU,PL},
aeres = {ACL},
selectif = {oui}
}
@article{Giraud09:ic,
author = {Mathieu Giraud},
journal = {Information and Computation},
title = {Asymptotic behavior of the number of runs and microruns},
year = {2009},
number = {11},
pages = {1221-1228},
volume = {207},
url = {http://dx.doi.org/10.1016/j.ic.2009.02.007},
doi = {10.1016/j.ic.2009.02.007},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
aeres = {ACL},
selectif = {oui}
}
@inproceedings{UricaruEtAlJOBIM09,
author = {Uricaru, R. and Michotey, C. and No\'{e}, L. and Chiapello, H. and Rivals, \'{E}.},
title = {Improved sensitivity and reliability of anchor based genome alignment},
booktitle = {Proceedings of the 10th Open Days in Biology, Computer Science and Mathematics (JOBIM), June 9-11, 2009, Nantes (France)},
pages = {31--36},
year = {2009},
url = {http://www.lirmm.fr/~uricaru/articles/jobim26.pdf},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {no},
x-proceedings = {no},
aeres = {ACT},
selectif = {non}
}
@inproceedings{GirdeaNoeKucherovWABI09,
author = {G{\^i}rdea, M. and Kucherov, G. and No{\'e}, L.},
title = {Back-translation for discovering distant protein homologies},
booktitle = {Proceedings of the 9th International Workshop in Algorithms in Bioinformatics ({WABI}), Philadelphia ({USA})},
pages = {108--120},
year = {2009},
editor = {Salzberg, S.L. and Warnow, T.},
volume = {5724},
series = {Lecture Notes in Computer Science},
publisher = {Springer Verlag},
month = {September},
doi = {10.1007/978-3-642-04241-6\_10},
url = {http://www.springerlink.com/content/3236004m84465n7j/},
pdf = {http://www.lifl.fr/~noe/files/pp_WABI09.pdf},
postscript = {http://www.lifl.fr/~noe/files/pp_WABI09.ps.gz},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
aeres = {ACT},
selectif = {oui}
}
@inproceedings{Steffen09:gpu-adp,
author = {Peter Steffen and Robert Giegerich and Mathieu Giraud},
booktitle = {Parallel Processing and Applied Mathematics / Parallel Biocomputing Conference (PPAM / PBC 09)},
pages = {290-299},
series = {Lecture Notes in Computer Science (LNCS)},
title = {GPU Parallelization of Algebraic Dynamic Programming},
volume = {6068},
year = {2009}
}
@inproceedings{GiraudVarreISPDC09,
author = {Mathieu Giraud and Jean-St{\'e}phane Varr{\'e}},
title = {{Parallel Position Weight Matrices Algorithms}},
booktitle = {Proceedings of the 8th International Symposium on Parallel and Distributed Computing, ISPDC'09},
year = 2009,
pages = {65-69},
inria = {Sequoia},
labo = {dans},
doi = {10.1109/ISPDC.2009.31},
url = {http://dx.doi.org/10.1109/ISPDC.2009.31},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
aeres = {ACT},
selectif = {oui}
}
@inproceedings{LiefoogheTouzetVarreLATA09,
author = {Aude Liefooghe and H\'el\`ene Touzet and Jean-St\'ephane Varr\'e},
title = {{Self-overlapping occurrences and Knuth-Morris-Pratt algorithm for weighted matching}},
booktitle = {Proceedings of the 3rd International Conference on Language and Automata Theory and Applications, April 2-8, 2009 - Tarragona, Spain},
year = {2009},
pages = {481--492},
volume = {5457},
doi = {10.1007/978-3-642-00982-2\_41},
url = {http://www.springerlink.com/content/p6q458l886880v45/},
pdf = {http://www.springerlink.com/index/p6q458l886880v45.pdf},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
aeres = {ACT},
selectif = {oui}
}
@inproceedings{anniversaryCPM09,
author = {Harris, E. and Lecroq, T. and Kucherov, G. and Lonardi, S.},
title = {{CPM}'s 20th Anniversary: A Statistical Retrospective},
booktitle = {Proceedings of the 20th Annual Combinatorial Pattern Matching Symposium (CPM), Lille (France), June 22-24, 2009},
pages = {1-11},
year = {2009},
volume = {5577},
series = {Lecture Notes in Computer Science},
doi = {10.1007/978-3-642-02441-2\_1},
publisher = {Springer Verlag},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
x-proceedings = {yes},
x-pays = {IT,US},
aeres = {ACT},
selectif = {oui}
}
@inproceedings{Saffarian09:jobim,
author = {Azadeh Saffarian and Mathieu Giraud and H{\'e}l{\`e}ne Touzet},
booktitle = {Journ{\'e}es Ouvertes Biologie Informatique Math{\'e}matiques (JOBIM 2009) (poster)},
title = {Paysage d'{\'e}nergie et structures localement optimales d'un ARN},
year = {2009},
note = {poster},
inria = {Sequoia},
labo = {dans},
x-international-audience = {no},
x-proceedings = {yes},
selectif = {non}
}
@inproceedings{DarracqTouzetVarre09:jobim,
author = {Aude Darracq and Jean-St{\'e}phane Varr{\'e} and Pascal Touzet},
booktitle = {Journ{\'e}es Ouvertes Biologie Informatique Math{\'e}matiques (JOBIM 2009)},
title = {A Study of Genomic Rearrangements in Maize Mitochondrial Genomes},
year = {2009},
note = {poster},
inria = {Sequoia},
labo = {dans},
x-international-audience = {no},
x-proceedings = {yes},
selectif = {non}
}
@inproceedings{DarracqTouzetVarre09:,
author = {Aude Darracq and Jean-St{\'e}phane Varr{\'e} and Pascal Touzet},
booktitle = {The 17th annual meeting of the Society for Molecular Biology and Evolution (SMBE 2009)},
title = {A Study of Genomic Rearrangements in Maize Mitochondrial Genomes},
year = {2009},
note = {poster},
inria = {Sequoia},
labo = {dans},
x-international-audience = {yes},
x-proceedings = {no},
selectif = {non}
}
@inproceedings{GirdeaNoeKucherovWABIPoster09,
author = {G\^{\i}rdea, M. and No{\'e}, L. and Kucherov, G.},
title = {Read Mapping Tool for {AB} {SOLiD} Data},
booktitle = {9th Workshop on Algorithms in Bioinformatics (WABI), Philadelphia (USA), September 12-13, 2009},
year = {2009},
month = {September},
note = {poster},
url = {http://www.lifl.fr/~noe/files/poster_WABI09.abstract.pdf},
inria = {Sequoia},
labo = {dans},
x-international-audience = {yes},
x-proceedings = {no},
selectif = {non}
}
@inproceedings{Varre09:bosc,
author = {Jean-St{\'e}phane Varr{\'e} and St{\'e}phane Janot and Mathieu Giraud},
booktitle = {Bioinformatics Open Source Conference ({BOSC})},
aeres = {COM},
inria = {dans},
labo = {Sequoia},
title = {Biomanycores, a repository of interoperable open-source code for many-cores bioinformatics},
year = {2009},
x-editorial-board = {no},
x-proceedings = {no},
x-international-audience = {yes}
}
@phdthesis{Caboche09:phd,
author = {Caboche, S\'egol\`ene},
title = {Mise en place d'une plateforme logicielle pour l'analyse des peptides non-ribosomiaux},
school = {Universit\'e de Lille 1},
year = {2009}
}
@phdthesis{Fontaine09:phd,
author = {Fontaine, Arnaud},
title = {Classification d'{ARN} codants et d'{ARN} non-codants},
school = {Universit\'e de Lille 1},
year = {2009},
url = {http://www2.lifl.fr/~fontaina/These.pdf}
}
@article{OF-09a,
author = {A. Ouangraoua and
P. Ferraro},
title = {A constrained edit distance algorithm between semi-ordered
trees},
journal = {Theor. Comput. Sci.},
volume = {410},
number = {8-10},
year = {2009},
pages = {837-846},
x-editorial-board = {yes},
x-international-audience = {yes}
}
@article{OF-09b,
author = {A. Ouangraoua and
P. Ferraro},
title = {A new constrained edit distance between quotiented ordered
trees},
journal = {J. Discrete Algorithms},
volume = {7},
number = {1},
year = {2009},
pages = {78-89},
x-editorial-board = {yes},
x-international-audience = {yes}
}
This file was generated by bibtex2html 1.94.