[1]	S. Caboche, V. Leclère, M. Pupin, and P. Kucherov, G. Jacques. Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity. Journal of bacteriology, 192(19):5143-5150, October 2010. [ bib | DOI | http ]
[2]	A. Ouangraoua, K. Swenson, and C. Chauve. An approximation algorithm for computing a parsimonious first speciation in the gene duplication model. In E. Tannier, editor, RECOMB-Comparative Genomics, LNBI 6398, volume 6398 of Lecture Notes in Bioinformatics, pages 290-302, October 2010. [ bib ]
[3]	A. Ouangraoua, A. Bergeron, and K. Swenson. Ultra-perfect sorting scenarios. In E. Tannier, editor, RECOMB-Comparative Genomics, LNBI 6398, volume 6398 of Lecture Notes in Bioinformatics, pages 50-61, October 2010. [ bib ]
[4]	A. Ouangraoua and A. Bergeron. Combinatorial structure of genome rearrangements scenarios. Journal of Computational Biology, 2010:1129-1144, September 2010. [ bib | DOI | http | http ]
[5]	C. Chauve, H. Gavranovic, A. Ouangraoua, and E. Tannier. Yeast ancestral genome reconstructions: the possibilities of computational methods. Journal of Computational Biology, 2010:1097-1112, September 2010. [ bib | DOI | http | http ]
[6]	L. Noé, M. Gîrdea, and G. Kucherov. Designing efficient spaced seeds for SOLiD read mapping. Advances in Bioinformatics, 2010:ID 708501, July 2010. [ bib | DOI | .html | .pdf ]
[7]	Laurie Tonon, Hélène Touzet, and Jean-Stéphane Varré. TFM-Explorer: mining cis-regulatory regions in genomes. Nucleic Acids Research, 38(suppl_2):W286-292, June 2010. [ bib | DOI | http | .pdf ]
[8]	Aude Darracq, Jean-Stéphane Varré, and Pascal Touzet. A scenario of mitochondrial genome evolution in maize based on rearrangement events. BMC Genomics, 11(233), April 2010. [ bib | DOI | http | .pdf ]
[9]	L. Noé, M. Gîrdea, and G. Kucherov. Seed design framework for mapping SOLiD reads. In B. Berger, editor, Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology (RECOMB), April 25-28, 2010, Lisbon (Portugal), volume 6044 of Lecture Notes in Computer Science, pages 384-396. Springer, April 2010. [ bib | DOI | arXiv | http | .ps.gz | .pdf ]
[10]	Jean-Stéphane Varré, Bertil Schmidt, Stéphane Janot, and Mathieu Giraud. Advances in Genomic Sequence Analysis and Pattern Discovery, chapter Manycore High-Performance Computing in Bioinformatics. World Scientific, 2010. to appear. [ bib | .html ]
[11]	Nadia Pisanti, Mathieu Giraud, and Pierre Peterlongo. Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications, chapter Filters and Seeds Approaches for Fast Homology Searches in Large Datasets. Wiley, 2010. (to appear). [ bib | .html ]
[12]	A. Ouangraoua, V. Guignon, S. Hamel, and C. Chauve. A new algorithm for aligning nested arc-annotated sequences under arbitrary weight schemes. Theoretical Computer Science, 2010. to appear. [ bib ]
[13]	Mathieu Giraud and Jean-Stéphane Varré. Parallel position weight matrices algorithms. Parallel Computing, 2010. to appear. [ bib | DOI | http ]
[14]	M. Gîrdea, G. Kucherov, and L. Noé. Back-translation for discovering distant protein homologies in the presence of frameshift mutations. Algorithms for Molecular Biology, 5(6), January 2010. [ bib | DOI | http | .pdf ]
[15]	Hideo Bannai, Mathieu Giraud, Kazuhiko Kusano, Wataru Matsubara, Ayumi Shinohara, and Jamie Simpson. The number of runs in a ternary word. In Prague Stringology Conference 2010 (PSC 2010), 2010. [ bib | .html ]
[16]	Aude Darracq. Evolution des génomes mitochondriaux de plantes - Approche de génomique comparative chez Zea mays et Beta vulgaris. PhD thesis, Université Lille 1, 2010. [ bib ]
[17]	Marta Gîrdea. New methods for biological sequence alignment. PhD thesis, Université Lille 1, 2010. [ bib ]