@comment{{This file has been generated by bib2bib 1.94}}
@comment{{Command line: bib2bib -oc cite2010 -ob 2010.bib 2010.bib}}
@inbook{VarreSchmidtJanotGiraud,
author = {Jean-St{\'e}phane Varr{\'e} and Bertil Schmidt and St{\'e}phane Janot and Mathieu Giraud},
chapter = {Manycore High-Performance Computing in Bioinformatics},
title = {Advances in Genomic Sequence Analysis and Pattern Discovery},
publisher = {World Scientific},
note = {to appear},
year = 2010,
inria = {Sequoia},
labo = {dans},
isbn = {978-981-4327-72-5},
url = {http://www.worldscibooks.com/lifesci/7972.html},
x-pays = {SG},
x-international-audience = {yes}
}
@inbook{Pisanti10:fast,
author = {Nadia Pisanti and Mathieu Giraud and Pierre Peterlongo},
chapter = {Filters and Seeds Approaches for Fast Homology Searches in Large Datasets},
editor = {Mourad Elloumi and Albert Y. Zomaya},
publisher = {Wiley},
title = {Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications},
year = {2010},
isbn = {978-0-470-50519-9},
url = {http://eu.wiley.com/WileyCDA/WileyTitle/productCd-0470505192.html},
x-pays = {IT},
inria = {Sequoia},
labo = {dans},
x-international-audience = {yes},
note = {(to appear)}
}
@article{OB-10,
author = {A. Ouangraoua and
A. Bergeron},
title = {Combinatorial structure of genome rearrangements scenarios},
journal = {Journal of Computational Biology},
year = {2010},
month = {September},
volume = {2010},
pages = {1129-1144},
doi = {10.1089/cmb.2010.0126},
url = {http://www.liebertonline.com/doi/full/10.1089/cmb.2010.0126},
pdf = {http://www.liebertonline.com/doi/pdfplus/10.1089/cmb.2010.0126},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {CA},
aeres = {ACL},
selectif = {oui}
}
@article{CGOT-10b,
author = {C. Chauve and
H. Gavranovic and
A. Ouangraoua and
E. Tannier},
title = {Yeast ancestral genome reconstructions: the possibilities of computational methods},
journal = {Journal of Computational Biology},
year = {2010},
month = {September},
volume = {2010},
pages = {1097-1112},
doi = {10.1089/cmb.2010.0092},
url = {http://www.liebertonline.com/doi/full/10.1089/cmb.2010.0092},
pdf = {http://www.liebertonline.com/doi/pdfplus/10.1089/cmb.2010.0092},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {CA},
aeres = {ACL},
selectif = {oui}
}
@article{CGOT-10,
author = {A. Ouangraoua and
V. Guignon and
S. Hamel and
C. Chauve},
title = {A new algorithm for aligning nested arc-annotated sequences under arbitrary weight schemes},
journal = {Theoretical Computer Science},
year = {2010},
note = {to appear},
inria = {Sequoia},
x-editorial-board = {yes},
x-international-audience = {yes},
selectif = {oui}
}
@article{GiraudVarreParco10,
author = {Mathieu Giraud and Jean-St{\'e}phane Varr{\'e}},
title = {Parallel Position Weight Matrices Algorithms},
journal = {Parallel Computing},
year = {2010},
note = {to appear},
doi = {10.1016/j.parco.2010.10.001},
url = {http://dx.doi.org/10.1016/j.parco.2010.10.001},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
aeres = {ACL},
selectif = {oui}
}
@article{NoeGirdeaKucherovABI10,
author = {No{\'e}, L. and G{\^i}rdea, M. and Kucherov, G.},
title = {Designing efficient spaced seeds for {SOLiD} read mapping},
journal = {Advances in Bioinformatics},
year = {2010},
month = {July},
volume = {2010},
optnumber = {},
pages = {ID 708501},
doi = {10.1155/2010/708501},
url = {http://www.hindawi.com/journals/abi/2010/708501.html},
pdf = {http://downloads.hindawi.com/journals/abi/2010/708501.pdf},
optnote = {},
optannote = {},
opthal-url = {},
pubmed-url = {http://www.ncbi.nlm.nih.gov/pubmed/20936175},
opteprint = {},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {RU},
aeres = {ACL},
selectif = {oui}
}
@article{DarracqVarreTouzetBMC10,
author = {Aude Darracq and Jean-St{\'e}phane Varr{\'e} and Pascal Touzet},
title = {A scenario of mitochondrial genome evolution in maize based on rearrangement events},
journal = {BMC Genomics},
year = {2010},
volume = {11},
number = {233},
month = {April},
doi = {10.1186/1471-2164-11-233},
url = {http://www.biomedcentral.com/1471-2164/11/233},
pdf = {http://www.biomedcentral.com/content/pdf/1471-2164-11-233.pdf},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
aeres = {ACL},
selectif = {oui}
}
@article{GirdeaNoeKucherovAMB10,
author = {G{\^i}rdea, M. and Kucherov, G. and No{\'e}, L.},
title = {Back-translation for discovering distant protein homologies in the presence of frameshift mutations},
journal = {Algorithms for Molecular Biology},
year = {2010},
volume = {5},
number = {6},
month = {January},
doi = {10.1186/1748-7188-5-6},
url = {http://www.almob.org/content/5/1/6},
pdf = {http://www.almob.org/content/pdf/1748-7188-5-6.pdf},
hal-url = {http://hal.inria.fr/inria-00456458},
pubmed-url = {http://www.ncbi.nlm.nih.gov/pubmed/20047662},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {RU},
aeres = {ACL},
selectif = {oui}
}
@article{TononTouzetVarreNAR10,
title = {{TFM-Explorer:} mining cis-regulatory regions in genomes},
shorttitle = {{TFM-Explorer}},
url = {http://nar.oxfordjournals.org/cgi/content/abstract/38/suppl_2/W286},
doi = {10.1093/nar/gkq473},
pdf = {http://nar.oxfordjournals.org/cgi/reprint/38/suppl_2/W286.pdf},
journal = {Nucleic Acids Research},
author = {Tonon,Laurie and Touzet,H\'el\`ene and Varr\'e, Jean-St\'ephane},
year = {2010},
month = {June},
volume = {38},
number = {suppl\_2},
pages = {W286-292},
optpubmed-url = {},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
aeres = {ACL},
selectif = {oui}
}
@article{CabocheEtAlJbact10,
author = {Caboche, S. and Lecl{\`e}re, V. and Pupin, M. and Kucherov, G. Jacques, P.},
title = {Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity},
journal = {Journal of bacteriology},
year = {2010},
month = {October},
volume = {192},
number = {19},
pages = {5143-5150},
url = {http://jb.asm.org/cgi/content/abstract/192/19/5143},
optpubmed-url = {http://www.ncbi.nlm.nih.gov/pubmed/20693331},
doi = {10.1128/JB.00315-10},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {RU},
aeres = {ACL},
selectif = {oui}
}
@inproceedings{OSC-10,
author = {A. Ouangraoua and
K. Swenson and
C. Chauve
},
title = {An approximation algorithm for computing a parsimonious first speciation in the gene duplication model},
booktitle = {RECOMB-Comparative Genomics, LNBI 6398},
year = {2010},
month = {October},
editor = {Tannier, E.},
volume = {6398},
series = {Lecture Notes in Bioinformatics},
pages = {290-302},
inria = {Sequoia},
x-editorial-board = {yes},
x-proceedings = {yes},
x-international-audience = {yes},
selectif = {oui}
}
@inproceedings{OBS-10,
author = {A. Ouangraoua and
A. Bergeron and
K. Swenson
},
title = {Ultra-perfect Sorting Scenarios},
booktitle = {RECOMB-Comparative Genomics, LNBI 6398},
year = {2010},
month = {October},
editor = {Tannier, E.},
volume = {6398},
series = {Lecture Notes in Bioinformatics},
pages = {50-61},
inria = {Sequoia},
x-editorial-board = {yes},
x-proceedings = {yes},
x-international-audience = {yes},
selectif = {oui}
}
@inproceedings{Bannai10:ternary,
author = {Hideo Bannai and Mathieu Giraud and Kazuhiko Kusano and Wataru Matsubara and Ayumi Shinohara and Jamie Simpson},
booktitle = {Prague Stringology Conference 2010 (PSC 2010)},
title = {The Number of Runs in a Ternary Word},
year = {2010},
url = {http://www.stringology.org/event/2010/p16.html},
x-pays = {JP,AU},
x-international-audience = {yes},
x-proceedings = {yes}
}
@inproceedings{NoeGirdeaKucherovRECOMB10,
author = {No{\'e}, L. and G{\^i}rdea, M. and Kucherov, G.},
title = {Seed design framework for mapping {SOLiD} reads},
booktitle = {Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology ({RECOMB}), April 25-28, 2010, Lisbon (Portugal)},
pages = {384--396},
year = {2010},
month = {April},
editor = {Berger, B.},
volume = {6044},
series = {Lecture Notes in Computer Science},
doi = {10.1007/978-3-642-12683-3\_25},
url = {http://www.springerlink.com/content/41535x341gu34131/},
pdf = {http://www.lifl.fr/~noe/files/pp_RECOMB10.pdf},
postscript = {http://www.lifl.fr/~noe/files/pp_RECOMB10.ps.gz},
eprint = {1006.2625},
publisher = {Springer},
inria = {Sequoia},
labo = {dans},
x-editorial-board = {yes},
x-international-audience = {yes},
x-pays = {RU},
x-proceedings = {yes},
aeres = {ACT},
selectif = {oui},
optnote = {(submitted: 176, accepted: 36, acceptance rate: 0.20)}
}
@phdthesis{Darracq10,
author = {Aude Darracq},
title = {Evolution des g\'enomes mitochondriaux de plantes - Approche de g\'enomique comparative chez {\em {Z}ea mays} et {\em {B}eta vulgaris}},
school = {Universit\'e Lille 1},
year = {2010}
}
@phdthesis{GirdeaPhD10,
author = {Marta G\^irdea},
title = {New methods for biological sequence alignment},
school = {Universit\'e Lille 1},
year = {2010}
}
This file was generated by bibtex2html 1.94.