@comment{{This file has been generated by bib2bib 1.94}}
@comment{{Command line: bib2bib -oc cite2012 -ob 2012.bib 2012.bib}}
@article{saffarian:hal-00756249,
hal_id = {hal-00756249},
url = {http://hal.inria.fr/hal-00756249},
title = {{RNA Locally Optimal Secondary Structures}},
author = {Saffarian, Azadeh and Giraud, Mathieu and De Monte, Antoine and Touzet, H{\'e}l{\`e}ne},
publisher = {Mary Ann Liebert},
pages = {1120-1133},
journal = {Journal of Computational Biology},
volume = {19},
number = {10 },
doi = {10.1089/cmb.2010.0178 },
year = {2012},
pdf = {http://hal.inria.fr/hal-00756249/PDF/saffarian-2012-locally-optimal.pdf},
x-international-audience = {yes},
x-editorial-board = {yes},
x-id-hal = {hal-00756249}
}
@article{allali:hal-00647725,
author = {Allali, Julien and Saule, C{\'e}dric and Chauve, Cedric and D'Aubenton-Carafa, Yves and Denise, Alain and Drevet, Christine and Ferraro, Pascal and Gautheret, Daniel and Herrbach, Claire and Leclerc, Fabrice and De Monte, Antoine and Ouangraoua, A{\"\i}da and Sagot, Marie-France and Termier, Michel and Thermes, Claude and Touzet, H{\'e}l{\`e}ne},
title = {{BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms}},
journal = {{Advances in Bioinformatics}},
pages = {accepted for publication (Feb, 2012)},
year = {2012},
x-international-audience = {yes},
x-editorial-board = {yes},
url = {http://hal.inria.fr/hal-00647725},
x-id-hal = {hal-00647725}
}
@article{kopylova:hal-00748990,
author = {Kopylova, Evguenia and No{\'e}, Laurent and Touzet, H{\'e}l{\`e}ne},
title = {{SortMeRNA: Fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.}},
journal = {{Bioinformatics}},
publisher = {Oxford journals},
pages = {1-10},
year = {2012},
month = oct,
doi = {10.1093/bioinformatics/bts611},
x-international-audience = {yes},
x-editorial-board = {yes},
url = {http://hal.inria.fr/hal-00748990},
x-id-hal = {hal-00748990}
}
@article{startek:hal-00749016,
author = {Startek, Michal and Lasota, Slawomir and Sykulski, Maciej and Bulak, Adam and Gambin, Anna and No{\'e}, Laurent and Kucherov, Gregory},
title = {{Efficient alternatives to PSI-BLAST}},
journal = {{bulletin of the polish academy of sciences: technical sciences}},
publisher = {POLISH ACADEMY of SCIENCES},
year = {2012},
x-international-audience = {yes},
x-editorial-board = {yes},
url = {http://hal.inria.fr/hal-00749016},
x-id-hal = {hal-00749016}
}
@article{bechet:hal-00749819,
author = {B{\'e}chet, Max and Caradec, Thibault and Hussein, Walaa and Abderrahmani, Ahmed and Chollet, Marl{\`e}ne and Lecl{\`e}re, Val{\'e}rie and Dubois, Thomas and Lereclus, Didier and Pupin, Maude and Jacques, Philippe},
title = {{Structure, biosynthesis, and properties of kurstakins, nonribosomal lipopeptides from Bacillus spp.}},
journal = {{Applied Microbiology and Biotechnology}},
volume = {95},
number = {3},
pages = {593-600},
year = {2012},
month = aug,
doi = {10.1007/s00253-012-4181-2},
x-international-audience = {yes},
x-editorial-board = {yes},
url = {http://hal.inria.fr/hal-00749819},
x-id-hal = {hal-00749819}
}
@article{abdo:hal-00750002,
author = {Abdo, Ammar and Caboche, S{\'e}gol{\`e}ne and Lecl{\`e}re, Val{\'e}rie and Jacques, Philippe and Pupin, Maude},
title = {{A new fingerprint to predict nonribosomal peptides activity.}},
journal = {{Journal of Computer-Aided Molecular Design}},
volume = {26},
number = {10},
pages = {1187-94},
year = {2012},
month = oct,
doi = {10.1007/s10822-012-9608-4},
x-international-audience = {yes},
x-editorial-board = {yes},
url = {http://hal.inria.fr/hal-00750002},
x-id-hal = {hal-00750002}
}
@article{leonard:inria-00636066,
author = {L{\'e}onard, Martine and Mouchard, Laurent and Salson, Mika{\"e}l},
title = {{On the number of elements to reorder when updating a suffix array}},
journal = {{Journal of Discrete Algorithms}},
publisher = {Elsevier},
volume = {11},
pages = {87-99},
year = {2012},
month = feb,
doi = {10.1016/j.jda.2011.01.002},
x-international-audience = {yes},
x-editorial-board = {yes},
url = {http://hal.inria.fr/inria-00636066},
x-id-hal = {inria-00636066}
}
@article{rivals:lirmm-00712653,
author = {Rivals, Eric and Philippe, Nicolas and Salson, Mika{\"e}l and L{\'e}onard, Martine and Commes, Th{\'e}r{\`e}se and Lecroq, Thierry},
title = {{A Scalable Indexing Solution to Mine Huge Genomic Sequence Collections}},
journal = {{ERCIM News}},
publisher = {European Research Consortium for Informatics and Mathematics (ERCIM)},
volume = {2012},
number = {89},
pages = {20-21},
year = {2012},
month = apr,
x-international-audience = {yes},
x-editorial-board = {yes},
url = {http://hal.inria.fr/lirmm-00712653},
x-id-hal = {lirmm-00712653}
}
@inproceedings{giraud:hal-00712554,
author = {Giraud, Mathieu and Groult, Richard and Lev{\'e}, Florence},
title = {{Subject and counter-subject detection for analysis of the Well-Tempered Clavier fugues}},
booktitle = {{International Symposium on Computer Music Modelling and Retrieval (CMMR 2012)}},
year = {2012},
pages = {661-673},
address = {United Kingdom},
x-international-audience = {yes},
x-proceedings = {yes},
url = {http://hal.inria.fr/hal-00712554},
x-id-hal = {hal-00712554}
}
@inproceedings{giraud:hal-00712565,
author = {Giraud, Mathieu and Groult, Richard and Lev{\'e}, Florence},
title = {{Detecting Episodes with Harmonic Sequences for Fugue Analysis}},
booktitle = {{ISMIR - International Society for Music Information Retrieval Conference - 2012}},
year = {2012},
address = {Porto, Portugal},
x-international-audience = {yes},
x-proceedings = {yes},
url = {http://hal.inria.fr/hal-00712565},
x-id-hal = {hal-00712565}
}
@inproceedings{pupin:hal-00734312,
author = {Pupin, Maude and Smail-Tabbone, Malika and Jacques, Philippe and Devignes, Marie-Dominique and Lecl{\`e}re, Val{\'e}rie},
title = {{NRPS toolbox for the discovery of new nonribosomal peptides and synthetases}},
booktitle = {{Journ{\'e}es Ouvertes en Biologie, l'Informatique et les Math{\'e}matiques - JOBIM 2012}},
year = {2012},
editor = {Fran{\c c}ois Coste and Denis Tagu},
pages = {89-93},
address = {Rennes, France},
x-international-audience = {no},
x-proceedings = {yes},
url = {http://hal.inria.fr/hal-00734312},
x-id-hal = {hal-00734312}
}
@inproceedings{thomas:hal-00749019,
author = {Thomas, Antoine and Ouangraoua, A{\"\i}da and Varr{\'e}, Jean-St{\'e}phane},
title = {{Tandem Halving Problems by DCJ}},
booktitle = {{Workshop on Algorithms in Bioinformatics}},
year = {2012},
doi = {10.1007/978-3-642-33122-0\_33},
publisher = {Springer Berlin Heidelberg},
volume = {7534},
pages = {417-429},
address = {Ljubljana, Slovenia},
x-international-audience = {yes},
x-proceedings = {yes},
url = {http://hal.inria.fr/hal-00749019},
x-id-hal = {hal-00749019}
}
@inproceedings{thomas:hal-00749026,
author = {Thomas, Antoine and Ouangraoua, A{\"\i}da and Varr{\'e}, Jean-St{\'e}phane},
title = {{Genome Halving by Block Interchange}},
booktitle = {{BIOINFORMATICS}},
year = {2012},
editor = {Jan Schier and Carlos Manuel B. A. Correia and Ana L. N. Fred and Hugo Gamboa},
publisher = {SciTePress},
pages = {58-65},
address = {Lisboa, Portugal},
x-international-audience = {yes},
x-proceedings = {yes},
url = {http://hal.inria.fr/hal-00749026},
x-id-hal = {hal-00749026}
}
@inproceedings{ouangraoua:hal-00750028,
author = {Ouangraoua, A{\"\i}da and Raffinot, Mathieu},
title = {{Faster and Simpler Minimal Conflicting Set Identification.}},
booktitle = {{Combinatorial Pattern Matching}},
year = {2012},
publisher = {Springer},
volume = {7354},
pages = {41-55},
address = {Helsinki, Finland},
x-international-audience = {yes},
x-proceedings = {yes},
url = {http://hal.inria.fr/hal-00750028},
x-id-hal = {hal-00750028}
}
@inproceedings{ouangraoua:hal-00750031,
author = {Ouangraoua, A{\"\i}da and Swenson, Krister and Bergeron, Anne},
title = {{On the comparison of sets of alternative transcripts}},
booktitle = {{International Symposium on Bioinformatics Research and Applications}},
year = {2012},
publisher = {Springer},
volume = {7292},
pages = {201-212},
address = {Dallas, Germany},
x-international-audience = {yes},
x-proceedings = {yes},
url = {http://hal.inria.fr/hal-00750031},
x-id-hal = {hal-00750031}
}
This file was generated by bibtex2html 1.94.