2006.bib

@comment{{This file has been generated by bib2bib 1.97}}
@comment{{Command line: bib2bib -oc cite2006 -ob 2006.bib 2006.bib}}
@inproceedings{BlinTouzetSPIRE06,
  author = {Blin, G. and Touzet, H.},
  title = {How to Compare Arc-Annotated Sequences: The Alignment Hierarchy},
  booktitle = {13th International Symposium on String Processing and Information Retrieval (SPIRE)},
  pages = {291--303},
  year = {2006},
  volume = {4209},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer Verlag},
  doi = {10.1007/11880561_24},
  url = {http://www.springerlink.com/content/4k37q116j2720832/},
  pdf = {http://igm.univ-mlv.fr/~gblin/pdf/Blin_Touzet_SPIRE2006.pdf}
}
@article{TouzetJDA06,
  author = {Touzet, H.},
  title = {Comparing similar ordered trees in linear-time},
  journal = {Journal of Discrete Algorithms},
  year = {2006},
  doi = {10.1016/j.jda.2006.07.002},
  url = {http://dx.doi.org/10.1016/j.jda.2006.07.002}
}
@inbook{TouzetHUMANA06,
  author = {H. Touzet},
  year = {2006},
  editor = {N. Bergman},
  title = {Comparative analysis of {RNA} genes: the {C}a{RNA}c software},
  publisher = {Humana Press},
  volume = {Methods in Molecular Biology,  Special issue on comparative genomics I},
  note = {in press}
}
@inproceedings{CohenEtAlMFCS06,
  author = {Cohen, J. and Fomin, F. and Heggernes, P. and Kratsch, D. and Kucherov, G.},
  title = {Optimal Linear Arrangement of Interval Graphs},
  booktitle = {Proceedings of the 13th International Symposium on
Mathematical Foundations of Computer Science (MFCS 2006), High Tatras (Slovakia), August 28 - September 1, 2006},
  pages = {267--279},
  year = {2006},
  volume = {4162},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer Verlag},
  doi = {10.1007/11821069},
  url = {http://www.springerlink.com/content/wrk8346657167528/},
  pdf = {http://hal.archives-ouvertes.fr/docs/00/11/52/49/PDF/CohenEtAlMFCS06.pdf}
}
@article{DidierLaprevottePupinJCB06,
  title = {Local decoding of sequences and alignment-free comparison.},
  author = {Didier, G. and Laprevotte, I. and Pupin, M. and Henaut, A.},
  journal = {Journal of Computational Biology},
  year = {2006},
  volume = {13},
  number = 8,
  pages = {1465--1476},
  doi = {doi:10.1089/cmb.2006.13.1465},
  url = {http://dx.doi.org/10.1089/cmb.2006.13.1465},
  pdf = {http://www.liebertonline.com/doi/pdf/10.1089/cmb.2006.13.1465}
}
@inproceedings{CabocheLeclereJOBIM06,
  title = {Database and comparison of non ribosomal peptides},
  author = {Caboche, S. and Lecl\`ere, V. and Jacques, P. and Pupin, M. and Kucherov, G.},
  booktitle = {7th Journ\'ees Ouvertes Biologie Informatique Math\'ematiques (JOBIM)},
  year = {2006},
  pdf = {http://www.lifl.fr/~caboche/Publications/JOBIM06.pdf},
  url = {http://cbi.labri.fr/jobim2006/presentations/050706/am/7_Caboche.pdf}
}
@inproceedings{LeclereCabocheCB06,
  title = {{NORINE}: a recent database highlighting a large biodiversity among NRPS peptide structures and activities},
  author = {Lecl\`ere, V. and Caboche, S. and Pupin, M. and Kucherov, G. and Jacques, P.},
  booktitle = {{RSC} conference, Chemical Biology: directing biosynthesis (poster)},
  year = {2006},
  url = {http://www.lifl.fr/~caboche/Publications/Cambridge.pdf}
}
@article{TempelBIOINFORMATICS06,
  author = {S{\'e}bastien Tempel and Mathieu Giraud and
                  Dominique Lavenier and Isra\"el-C{\'e}sar Lerman and
                  Anne-Sophie Valin and Ivan Cou{\'e}e and Abdelhak El
                  Amrani and Jacques Nicolas},
  title = {Domain organization within repeated DNA sequences:
                  application to the study of a family of transposable
                  elements.},
  journal = {Bioinformatics},
  volume = {22},
  number = {16},
  year = {2006},
  pages = {1948--1954},
  doi = {10.1093/bioinformatics/btl337},
  url = {http://bioinformatics.oxfordjournals.org/cgi/content/full/22/16/1948},
  pdf = {http://bioinformatics.oxfordjournals.org/cgi/reprint/22/16/1948.pdf}
}
@inproceedings{GiraudCIAA06,
  author = {Mathieu Giraud and Philippe Veber and Dominique
                  Lavenier},
  title = {Path-Equivalent Removal of Epsilon-Transitions},
  booktitle = {11th International Conference on Implementation and
                  Application of Automata ({CIAA})},
  year = {2006},
  pages = {23--33},
  volume = {4094},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer Verlag},
  month = {August},
  doi = {10.1007/11812128_4},
  url = {http://www.springerlink.com/content/d2342g16285r6n43/},
  pdf = {http://www.springerlink.com/content/d2342g16285r6n43/fulltext.pdf}
}
@inproceedings{LiefoogheTouzetVarreCPM06,
  author = {Liefooghe, A. and Touzet, H. and Varr{\'e}, J.-S.},
  title = {Large Scale Matching for Position Weight Matrices.},
  booktitle = {Proceedings 17th Annual Symposium on Combinatorial Pattern Matching (CPM)},
  pages = {401--412},
  year = {2006},
  volume = {4009},
  series = {Lecture Notes in Computer Science},
  publisher = {Springer Verlag},
  doi = {doi:10.1007/11780441_36},
  url = {http://www.springerlink.com/content/7113757vj6205067/},
  pdf = {http://www.springerlink.com/content/7113757vj6205067/fulltext.pdf}
}
@article{DefranceTouzetBMC06,
  title = {Predicting transcription factor binding sites using local over-representation and comparative genomics},
  author = {Defrance, M. and Touzet, H.},
  journal = {{BMC} Bioinformatics},
  year = {2006},
  doi = {10.1186/1471-2105-7-396},
  pdf = {http://www.biomedcentral.com/content/pdf/1471-2105-7-396.pdf},
  url = {http://www.biomedcentral.com/1471-2105/7/396/abstract}
}
@article{KucherovNoeRoytbergJBCB06,
  author = {Kucherov, G. and No{\'e}, L. and Roytberg, M.},
  title = {A unifying framework for seed sensitivity and its application to subset seeds},
  journal = {Journal of Bioinformatics and Computational Biology},
  year = {2006},
  volume = {4},
  number = {2},
  pages = {553--569},
  doi = {10.1142/S0219720006001977},
  url = {http://www.worldscinet.com/jbcb/04/0402/S0219720006001977.html},
  pdf = {http://www.worldscinet.com/jbcb/04/preserved-docs/0402/S0219720006001977.pdf}
}
@phdthesis{defrance:tel-00124471,
  hal_id = {tel-00124471},
  url = {http://tel.archives-ouvertes.fr/tel-00124471},
  title = {{Algorithmes pour l'analyse de r{\'e}gions r{\'e}gulatrices dans le g{\'e}nome d'eucaryotes sup{\'e}rieurs}},
  author = {Defrance, Matthieu},
  affiliation = {Laboratoire d'Informatique Fondamentale de Lille - LIFL},
  school = {Universit{\'e} Lille 1},
  type = {THESE},
  year = {2006},
  month = dec,
  pdf = {http://tel.archives-ouvertes.fr/tel-00124471/PDF/these.pdf}
}

This file was generated by bibtex2html 1.97.