2008.bib

@comment{{This file has been generated by bib2bib 1.97}}
@comment{{Command line: bib2bib -oc cite2008 -ob 2008.bib 2008.bib}}
@article{PeterlongoEtAlBMC08,
  author = {Pierre Peterlongo and Laurent No{\'e} and Dominique Lavenier and Van Hoa Nguyen and Gregory Kucherov and Mathieu Giraud},
  inria = {Sequoia},
  labo = {dans},
  journal = {BMC Bioinformatics},
  title = {Optimal neighborhood indexing for protein similarity search},
  x-editorial-board = {yes},
  x-international-audience = {yes},
  number = {534},
  volume = {9},
  doi = {10.1186/1471-2105-9-534},
  pdf = {http://www.biomedcentral.com/content/pdf/1471-2105-9-534.pdf},
  url = {http://www.biomedcentral.com/1471-2105/9/534},
  year = {2008}
}
@article{blin:hal-00506348,
  hal_id = {hal-00506348},
  url = {http://hal.archives-ouvertes.fr/hal-00506348},
  title = {{Alignments of RNA structures.}},
  author = {Blin, Guillaume and Denise, Alain and Dulucq, Serge and Herrbach, Claire and Touzet, Helene},
  affiliation = {Laboratoire d'Informatique Gaspard-Monge - LIGM , Laboratoire de Recherche en Informatique - LRI , Institut de g{\'e}n{\'e}tique et microbiologie - IGM , AMIB - INRIA Saclay - Ile de France , Laboratoire Bordelais de Recherche en Informatique - LaBRI , Laboratoire d'Informatique Fondamentale de Lille - LIFL , SEQUOIA - INRIA Lille - Nord Europe},
  pages = {309-322},
  journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics},
  volume = {7},
  number = {2 },
  audience = {internationale },
  doi = {10.1109/TCBB.2008.28 },
  year = {2010},
  pdf = {http://hal.archives-ouvertes.fr/hal-00506348/PDF/hal.pdf}
}
@article{FontaineDeMonteTouzetNAR08,
  title = {{MAGNOLIA}: multiple alignment of protein-coding and structural {RNA} sequences},
  author = {Arnaud Fontaine and  Antoine de Monte and H\'el\`ene Touzet},
  journal = {Nucleic Acids Research },
  year = {2008},
  volume = {Web Server Issue, Vol 36},
  number = {suppl 2},
  pages = {W14-W18},
  url = {http://nar.oxfordjournals.org/cgi/content/full/gkn321},
  pdf = {http://nar.oxfordjournals.org/cgi/reprint/36/suppl_2/W14.pdf},
  doi = {10.1093/nar/gkn321},
  x-editorial-board = {yes},
  x-international-audience = {yes},
  aeres = {ACL},
  selectif = {oui},
  labo = {dans},
  inria = {SEQUOIA}
}
@article{TouzetJME08,
  title = {{Does hybridization increase evolutionary rate ? Data from the 28S-rDNA D8 domain in echinoderms}},
  author = {Anne Chenuil and  Emilie Egea and Caroline Rocher and  H\'el\`ene Touzet and Jean-Pierre F\'eral},
  journal = {Journal of Molecular Evolution},
  volume = {67},
  number = {5},
  pages = {539-550},
  year = {2008},
  doi = {10.1007/s00239-008-9171-8},
  url = {http://www.springerlink.com/content/526u861u76128q27/fulltext.html},
  pdf = {http://www.springerlink.com/content/526u861u76128q27/fulltext.pdf},
  aeres = {ACL},
  x-editorial-board = {yes},
  x-international-audience = {yes},
  selectif = {oui},
  labo = {dans},
  inria = {SEQUOIA}
}
@inproceedings{RoytbergEtAlALBIO08,
  author = {Roytberg, M. and Gambin, A. and No{\'e}, L. and
                  Lasota, S. and Furletova, E. and Szczurek, E. and
                  Kucherov, G.},
  title = {Efficient seeding techniques for protein similarity
                  search},
  booktitle = {Proceedings of the 2nd Workshop on Algorithms in
                  Molecular Biology (ALBIO'08), Vienna (Austria), July
                  7-9, 2008},
  year = 2008,
  publisher = {Springer Verlag},
  pages = {466--478},
  editor = {Elloumi, M and K\"{u}ng, J. and Linial, M. and Murphy, R.F. and Schneider, K. and Toma, C.},
  volume = {13},
  series = {Communications in Computer and Information Science},
  pdf = {http://www.lifl.fr/~noe/files/pp_ALBIO08.pdf},
  postscript = {http://www.lifl.fr/~noe/files/pp_ALBIO08.ps.gz},
  doi = {10.1007/978-3-540-70600-7_36},
  url = {http://www.springerlink.com/content/m3560l36r573xjr5/},
  aeres = {ACT},
  x-editorial-board = {yes},
  x-international-audience = {yes},
  x-proceedings = {yes},
  selectif = {non},
  labo = {dans},
  inria = {SEQUOIA}
}
@inproceedings{Giraud08:lata,
  author = {Mathieu Giraud},
  booktitle = {Int. Conf. on Language and Automata Theory and Applications (LATA 08)},
  aeres = {ACT},
  x-editorial-board = {yes},
  x-international-audience = {yes},
  x-proceedings = {yes},
  inria = {Sequoia},
  labo = {dans},
  selectif = {oui},
  series = {Lecture Notes in Computer Science (LNCS)},
  title = {Not so many runs in strings},
  doi = {10.1007/978-3-540-88282-4_22},
  url = {http://www.lifl.fr/~giraud/publis/giraud-lata-08.pdf},
  volume = {5196},
  pages = {232--239},
  year = {2008}
}
@inproceedings{KolpakovKucherovCPM08,
  author = {Kolpakov, R. and Kucherov, G.},
  title = {Searching for gapped palindromes},
  booktitle = {Proceedings of the 19th Annual Symposium on Combinatorial Pattern Matching (CPM), June 18-20, 2008, Pisa (Italy)},
  pages = {18--30},
  year = 2008,
  volume = 5029,
  series = {Lecture Notes in Computer Science},
  publisher = {Springer Verlag},
  pdf = {http://www.lifl.fr/~kucherov/PAPERS/KolpakovKucherovCPM08.pdf},
  url = {http://www.springerlink.com/content/v45825l304h45533/},
  doi = {10.1007/978-3-540-69068-9_5},
  aeres = {ACT},
  x-editorial-board = {yes},
  x-international-audience = {yes},
  x-proceedings = {yes},
  selectif = {oui},
  labo = {dans},
  inria = {SEQUOIA}
}
@inproceedings{SYMPHOR2008a,
  author = {Jean-\'Emile Symphor and Alban Mancheron and Lionel
                  Vinceslas and Pascal Poncelet},
  title = {{Le \textsc{fia} : un nouvel automate permettant
                  l'extraction efficace d'\textsl{itemsets} fr\'equents
                  dans les \textsl{flots de donn\'ees}}},
  booktitle = {Proceedings of  the 8$^{th}$ Extraction et Gestion des Connaissances (\textsc{egc})},
  pages = {157--168},
  year = {2008},
  publisher = {C\'epadu\`es-\'Editions},
  series = {Revue des Nouvelles Technologies de l'Information},
  volume = {RNTI-E-11 (1)},
  isbn = {978-2-85428-818-6},
  pdf = {http://www.lgi2p.ema.fr/~poncelet/publications/papers/SymphorEGC087.pdf},
  x-editorial-board = {yes},
  x-international-audience = {no},
  x-proceedings = {yes}
}
@inproceedings{guillemot:hal-00824929,
  hal_id = {hal-00824929},
  url = {http://hal.inria.fr/hal-00824929},
  title = {{Parameterized complexity and approximability of the SLCS problem}},
  author = {Guillemot, Sylvain},
  language = {Anglais},
  affiliation = {SEQUOIA - INRIA Lille - Nord Europe , Laboratoire d'Informatique Fondamentale de Lille - LIFL},
  booktitle = {{Proceedings of Parameterized and Exact Computation: Third International Workshop (IWPEC 2008)}},
  pages = {115--128},
  address = {Victoria, Canada},
  volume = {5018},
  audience = {internationale },
  doi = {10.1007/978-3-540-79723-4_12},
  year = {2008}
}
@inproceedings{guillemot:hal-00824933,
  hal_id = {hal-00824933},
  url = {http://hal.inria.fr/hal-00824933},
  title = {{FPT algorithms for path-transversals and cycle-transversals problems in graphs}},
  author = {Guillemot, Sylvain},
  language = {Anglais},
  affiliation = {SEQUOIA - INRIA Lille - Nord Europe , Laboratoire d'Informatique Fondamentale de Lille - LIFL},
  booktitle = {{Proceedings of Parameterized and Exact Computation: Third International Workshop (IWPEC 2008)}},
  pages = {129--140},
  address = {Victoria, Canada},
  volume = {5018},
  audience = {internationale },
  doi = {10.1007/978-3-540-79723-4_13},
  year = {2008}
}
@inproceedings{byrka:hal-00824940,
  hal_id = {hal-00824940},
  url = {http://hal.inria.fr/hal-00824940},
  title = {{New Results on Optimizing Rooted Triplets Consistency}},
  author = {Byrka, Jaroslaw and Guillemot, Sylvain and Jansson, Jesper},
  language = {Anglais},
  affiliation = {SEQUOIA - INRIA Lille - Nord Europe , Laboratoire d'Informatique Fondamentale de Lille - LIFL},
  booktitle = {{Proceedings of the 19th International Symposium on Algorithms and Computation (ISAAC 2008)}},
  pages = {484--495},
  address = {Gold Coast, Australie},
  volume = {5369},
  audience = {internationale },
  doi = {10.1007/978-3-540-92182-0_44},
  year = {2008}
}
@inbook{Jansson08:1,
  author = {Jesper Jansson and W.-K. Sung},
  title = {New Topics in Theoretical Computer Science},
  chapter = {The Maximum Agreement of Two Nested Phylogenetic Networks},
  publisher = {NOVA Publishers},
  x-international-audience = {yes},
  year = 2008,
  pages = {119-141},
  isbn = {978-1-60456-100-5},
  optdoi = {},
  opturl = {}
}
@inbook{Jansson08:2,
  author = {Jesper Jansson},
  chapter = {Directed Perfect Phylogeny (Binary Characters) -- 1991; Gusfield},
  title = {Encyclopedia of Algorithms},
  publisher = {Springer},
  x-international-audience = {yes},
  year = 2008,
  pages = {246-248},
  editor = {Kao, Ming-Yang},
  isbn = {978-0-387-36061-4},
  doi = {10.1007/978-0-387-30162-4_112},
  url = {http://www.springerlink.com/content/qx64143355344m57/}
}
@inbook{Jansson08:3,
  author = {Jesper Jansson},
  chapter = {Perfect Phylogeny (Bounded Number of States) -- 1997; Kannan, Warnow},
  title = {Encyclopedia of Algorithms},
  publisher = {Springer},
  x-international-audience = {yes},
  year = 2008,
  pages = {644-647},
  editor = {Kao, Ming-Yang},
  isbn = {978-0-387-36061-4},
  doi = {10.1007/978-0-387-30162-4_288},
  url = {http://www.springerlink.com/content/p712322k476p6m0t/}
}
@inbook{Jansson08:4,
  author = {Jesper Jansson},
  chapter = {Phylogenetic Tree Construction from a Distance Matrix -- 1989; Hein},
  title = {Encyclopedia of Algorithms},
  publisher = {Springer},
  x-international-audience = {yes},
  year = 2008,
  pages = {651-653},
  editor = {Kao, Ming-Yang},
  isbn = {978-0-387-36061-4},
  doi = {10.1007/978-0-387-30162-4_292},
  url = {http://www.springerlink.com/content/n6002jk482656404/}
}
@inbook{Kucherov08:ea,
  author = {Kucherov, G. and Sokol, D.},
  chapter = {Approximate Tandem Repeats},
  title = {Encyclopedia of Algorithms},
  pages = {48--51},
  publisher = {Springer},
  x-international-audience = {yes},
  year = 2008,
  editor = {Kao, Ming-Yang},
  isbn = {978-0-387-30770-1},
  doi = {10.1007/978-0-387-30162-4_24},
  url = {http://www.springerlink.com/content/r7376614263rv3h0/}
}
@inproceedings{GirdeaKucherovNoeJOBIM08Poster,
  author = {G{\^i}rdea, M. and Kucherov, G. and No{\'e}, L.},
  title = {Protein sequence alignment via anti translation},
  booktitle = {Proceedings of the 9th Open Days in Biology, Computer Science and Mathematics (JOBIM), June 30-July 2, 2008, Lille (France)},
  year = {2008},
  pages = {157--158},
  url = {http://www.lifl.fr/~girdea/at/files/jobim044.pdf},
  note = {(short talk with poster)},
  x-editorial-board = {yes},
  x-international-audience = {no},
  x-proceedings = {yes}
}
@inproceedings{allali:hal-00375710,
  hal_id = {hal-00375710},
  url = {http://hal.archives-ouvertes.fr/hal-00375710},
  title = {{Benchmarking RNA secondary structure comparison algorithms}},
  author = {Allali, Julien and D'Aubenton-Carafa, Yves and Chauve, Cedric and Denise, Alain and Drevet, Christine and Ferraro, Pascal and Gautheret, Daniel and Herrbach, Claire and Leclerc, Fabrice and De Monte, Antoine and Ouangraoua, A{\"\i}da and Sagot, Marie-France and Saule, C. and Termier, Michel and Thermes, Claude and Touzet, Helene},
  affiliation = {Laboratoire Bordelais de Recherche en Informatique - LaBRI , Centre de g{\'e}n{\'e}tique mol{\'e}culaire - CGM , SFU Discrete Mathematics Group - SFU-DMG , Laboratoire de Recherche en Informatique - LRI , Institut de g{\'e}n{\'e}tique et microbiologie - IGM , Pacific Institute for the Mathematical Sciences - PIMS , Technologie avanc{\'e}e pour le g{\'e}nome et la clinique , Maturation des ARN et enzymologie mol{\'e}culaire - MAEM , Laboratoire d'Informatique Fondamentale de Lille - LIFL , HELIX - INRIA Rh{\^o}ne-Alpes , SEQUOIA - INRIA Futurs , SEQUOIA - INRIA Lille - Nord Europe},
  booktitle = {{Actes des Journ{\'e}es Ouvertes de Biologie, Informatique et Math{\'e}matiques}},
  pages = {67-68},
  note = {(short talk with poster)},
  address = {Lille, France},
  audience = {internationale },
  year = {2008}
}
@misc{Caboche08:jobim,
  author = {Caboche, S{\'e}gol{\`e}ne and Pupin, Maude and Lecl{\`e}re, Val{\'e}rie and Jacques, Philippe and Kucherov, Gregory},
  title = {{NORINE}: a platform dedicated to nonribosomal peptides},
  year = 2008,
  note = {9th Open Days in Biology, Computer Science and Mathematics (JOBIM), June 30-July 2, 2008, Lille (France)},
  inria = {SEQUOIA},
  x-editorial-board = {yes},
  x-international-audience = {no}
}
@misc{Caboche08:embnet,
  author = {Caboche, S{\'e}gol{\`e}ne and Pupin, Maude and Lecl{\`e}re, Val{\'e}rie and Jacques, Philippe and Kucherov, Gregory},
  title = {{NORINE}: a public resource for nonribosomal peptides},
  year = 2008,
  note = {EMBnet 2008 - 20th Anniversary Conference},
  url = {http://issuu.com/lfalquet/docs/embnet_news_14_3/64},
  pdf = {http://air.unimi.it/bitstream/2434/62600/1/Abstracts-EMBnetConference2008.pdf},
  inria = {SEQUOIA},
  x-editorial-board = {yes},
  x-international-audience = {yes}
}
@misc{Caboche08:eccb,
  author = {Caboche, S{\'e}gol{\`e}ne and Pupin, Maude and Lecl{\`e}re, Val{\'e}rie and Jacques, Philippe and Kucherov, Gregory},
  title = {{NORINE}: database and efficient algorithms dedicated to nonribosomal peptides},
  year = 2008,
  note = {ECCB08 European Conference on Computational Biology},
  url = {http://www.eccb08.org/themes/default/poster/poster/posters-B.html#8},
  inria = {SEQUOIA},
  x-editorial-board = {yes},
  x-international-audience = {yes}
}
@misc{VarreBERLIN08,
  author = {Darracq, A. and Varr{\'e}, J.-S. and Courseaux,
                  A. and Mar\'echal-Drouard, L. and Touzet, P.},
  title = {Evolution of the mitochondrial genome in beet. A
                  comparative genomic study at the intra-specific
                  level},
  year = 2008,
  note = {XX International Congress of Genetics},
  aeres = {AFF},
  selectif = {non},
  labo = {dans},
  inria = {SEQUOIA}
}
@inproceedings{VINCESLAS2008,
  author = {Lionel Vinceslas and Jean-\'Emile Symphor and Alban
                  Mancheron and Pascal Poncelet},
  title = {{FIASCO} : un nouvel algorithme d'extraction
                  d'itemsets fr\'equents dans les flots
                  de donn\'ees},
  booktitle = {Proceedings of  the 8th Extraction et Gestion des Connaissances (EGC)},
  pages = {235--236},
  year = {2008},
  publisher = {C\'epadu\`es-\'Editions},
  series = {Revue des Nouvelles Technologies de l'Information},
  volume = {RNTI-E-11 (1)},
  isbn = {978-2-85428-818-6},
  x-editorial-board = {yes},
  x-international-audience = {no},
  x-proceedings = {yes}
}
@phdthesis{liefooghe:tel-00832725,
  hal_id = {tel-00832725},
  url = {http://tel.archives-ouvertes.fr/tel-00832725},
  title = {{Matrices score-position, algorithmes et propri{\'e}t{\'e}s}},
  author = {Liefooghe, Aude},
  affiliation = {Laboratoire d'Informatique Fondamentale de Lille - LIFL , BONSAI - INRIA Lille - Nord Europe},
  school = {Universit{\'e} Lille 1},
  type = {THESE},
  year = {2008},
  month = jul,
  pdf = {http://tel.archives-ouvertes.fr/tel-00832725/PDF/document.pdf}
}
@phdthesis{varre:tel-00832685,
  hal_id = {tel-00832685},
  url = {http://tel.archives-ouvertes.fr/tel-00832685},
  title = {{Algorithmes pour la comparaison de g{\'e}nomes et la recherche de signaux cis-r{\'e}gulateurs}},
  author = {Varr{\'e}, Jean-St{\'e}phane},
  affiliation = {BONSAI - INRIA Lille - Nord Europe , Laboratoire d'Informatique Fondamentale de Lille - LIFL},
  school = {Universit{\'e} Lille 1},
  type = {HDR},
  year = {2008},
  month = dec,
  pdf = {http://tel.archives-ouvertes.fr/tel-00832685/PDF/hdr.pdf}
}

This file was generated by bibtex2html 1.97.