2012.bib

@comment{{This file has been generated by bib2bib 1.97}}
@comment{{Command line: bib2bib -oc cite2012 -ob 2012.bib 2012.bib}}
@phdthesis{tran:tel-00832663,
  hal_id = {tel-00832663},
  url = {http://tel.archives-ouvertes.fr/tel-00832663},
  title = {{Comparaisons de s{\'e}quences biologiques sur architecture massivement multi-c{\oe}urs}},
  author = {Tran, Tuan Tu},
  affiliation = {Laboratoire d'Informatique Fondamentale de Lille - LIFL , BONSAI - INRIA Lille - Nord Europe},
  school = {Universit{\'e} Lille 1},
  type = {THESE},
  year = {2012},
  month = dec,
  pdf = {http://tel.archives-ouvertes.fr/tel-00832663/PDF/phd-tuan-tu-tran.pdf}
}
@article{saffarian:hal-00756249,
  hal_id = {hal-00756249},
  url = {http://hal.inria.fr/hal-00756249},
  title = {{RNA Locally Optimal Secondary Structures}},
  author = {Saffarian, Azadeh and Giraud, Mathieu and De Monte, Antoine and Touzet, H{\'e}l{\`e}ne},
  publisher = {Mary Ann Liebert},
  pages = {1120-1133},
  journal = {Journal of Computational Biology},
  volume = {19},
  number = {10 },
  doi = {10.1089/cmb.2010.0178},
  year = {2012},
  pdf = {http://hal.inria.fr/hal-00756249/PDF/saffarian-2012-locally-optimal.pdf},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-id-hal = {hal-00756249}
}
@article{allali:hal-00647725,
  author = {Allali, Julien and Saule, C{\'e}dric and Chauve, Cedric and D'Aubenton-Carafa, Yves and Denise, Alain and Drevet, Christine and Ferraro, Pascal and Gautheret, Daniel and Herrbach, Claire and Leclerc, Fabrice and De Monte, Antoine and Ouangraoua, A{\"\i}da and Sagot, Marie-France and Termier, Michel and Thermes, Claude and Touzet, H{\'e}l{\`e}ne},
  title = {{BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms}},
  journal = {{Advances in Bioinformatics}},
  year = {2012},
  doi = {10.1155/2012/893048},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  url = {http://hal.inria.fr/hal-00647725},
  x-id-hal = {hal-00647725}
}
@article{kopylova:hal-00748990,
  author = {Kopylova, Evguenia and No{\'e}, Laurent and Touzet, H{\'e}l{\`e}ne},
  title = {{SortMeRNA: Fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.}},
  journal = {{Bioinformatics}},
  publisher = {Oxford journals},
  pages = {3211-3217},
  year = {2012},
  month = oct,
  doi = {10.1093/bioinformatics/bts611},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  url = {http://hal.inria.fr/hal-00748990},
  x-id-hal = {hal-00748990}
}
@article{startek:hal-00749016,
  author = {Startek, Michal and Lasota, Slawomir and Sykulski, Maciej and Bulak, Adam and Gambin, Anna and No{\'e}, Laurent and Kucherov, Gregory},
  title = {{Efficient alternatives to PSI-BLAST}},
  journal = {{bulletin of the polish academy of sciences: technical sciences}},
  publisher = {POLISH ACADEMY of SCIENCES},
  year = {2012},
  doi = {10.2478/v10175-012-0063-0},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  url = {http://hal.inria.fr/hal-00749016},
  x-id-hal = {hal-00749016}
}
@article{bechet:hal-00749819,
  author = {B{\'e}chet, Max and Caradec, Thibault and Hussein, Walaa and Abderrahmani, Ahmed and Chollet, Marl{\`e}ne and Lecl{\`e}re, Val{\'e}rie and Dubois, Thomas and Lereclus, Didier and Pupin, Maude and Jacques, Philippe},
  title = {{Structure, biosynthesis, and properties of kurstakins, nonribosomal lipopeptides from Bacillus spp.}},
  journal = {{Applied Microbiology and Biotechnology}},
  volume = {95},
  number = {3},
  pages = {593-600},
  year = {2012},
  month = aug,
  doi = {10.1007/s00253-012-4181-2},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  url = {http://hal.inria.fr/hal-00749819},
  x-id-hal = {hal-00749819}
}
@article{abdo:hal-00750002,
  author = {Abdo, Ammar and Caboche, S{\'e}gol{\`e}ne and Lecl{\`e}re, Val{\'e}rie and Jacques, Philippe and Pupin, Maude},
  title = {{A new fingerprint to predict nonribosomal peptides activity.}},
  journal = {{Journal of Computer-Aided Molecular Design}},
  volume = {26},
  number = {10},
  pages = {1187-94},
  year = {2012},
  month = oct,
  doi = {10.1007/s10822-012-9608-4},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  url = {http://hal.inria.fr/hal-00750002},
  x-id-hal = {hal-00750002}
}
@article{leonard:inria-00636066,
  author = {L{\'e}onard, Martine and Mouchard, Laurent and Salson, Mika{\"e}l},
  title = {{On the number of elements to reorder when updating a suffix array}},
  journal = {{Journal of Discrete Algorithms}},
  publisher = {Elsevier},
  volume = {11},
  pages = {87-99},
  year = {2012},
  month = feb,
  doi = {10.1016/j.jda.2011.01.002},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  url = {http://hal.inria.fr/inria-00636066},
  x-id-hal = {inria-00636066}
}
@article{rivals:lirmm-00712653,
  author = {Rivals, Eric and Philippe, Nicolas and Salson, Mika{\"e}l and L{\'e}onard, Martine and Commes, Th{\'e}r{\`e}se and Lecroq, Thierry},
  title = {{A Scalable Indexing Solution to Mine Huge Genomic Sequence Collections}},
  journal = {{ERCIM News}},
  publisher = {European Research Consortium for Informatics and Mathematics (ERCIM)},
  volume = {2012},
  number = {89},
  pages = {20-21},
  year = {2012},
  month = apr,
  x-international-audience = {yes},
  x-editorial-board = {yes},
  url = {http://hal.inria.fr/lirmm-00712653},
  x-id-hal = {lirmm-00712653}
}
@inproceedings{giraud:hal-00712554,
  author = {Giraud, Mathieu and Groult, Richard and Lev{\'e}, Florence},
  title = {{Subject and counter-subject detection for analysis of the Well-Tempered Clavier fugues}},
  booktitle = {{International Symposium on Computer Music Modelling and Retrieval (CMMR 2012)}},
  year = {2012},
  pages = {661-673},
  address = {United Kingdom},
  x-international-audience = {yes},
  x-proceedings = {yes},
  url = {http://hal.inria.fr/hal-00712554},
  x-id-hal = {hal-00712554}
}
@inproceedings{giraud:hal-00712565,
  author = {Giraud, Mathieu and Groult, Richard and Lev{\'e}, Florence},
  title = {{Detecting Episodes with Harmonic Sequences for Fugue Analysis}},
  booktitle = {{ISMIR - International Society for Music Information Retrieval Conference - 2012}},
  year = {2012},
  address = {Porto, Portugal},
  x-international-audience = {yes},
  x-proceedings = {yes},
  url = {http://hal.inria.fr/hal-00712565},
  x-id-hal = {hal-00712565}
}
@inproceedings{pupin:hal-00734312,
  author = {Pupin, Maude and Smail-Tabbone, Malika and Jacques, Philippe and Devignes, Marie-Dominique and Lecl{\`e}re, Val{\'e}rie},
  title = {{NRPS toolbox for the discovery of new nonribosomal peptides and synthetases}},
  booktitle = {{Journ{\'e}es Ouvertes en Biologie, l'Informatique et les Math{\'e}matiques - JOBIM 2012}},
  year = {2012},
  editor = {Fran{\c c}ois Coste and Denis Tagu},
  pages = {89-93},
  address = {Rennes, France},
  x-international-audience = {no},
  x-proceedings = {yes},
  url = {http://hal.inria.fr/hal-00734312},
  x-id-hal = {hal-00734312}
}
@inproceedings{thomas:hal-00749019,
  author = {Thomas, Antoine and Ouangraoua, A{\"\i}da and Varr{\'e}, Jean-St{\'e}phane},
  title = {{Tandem Halving Problems by DCJ}},
  booktitle = {{Workshop on Algorithms in Bioinformatics}},
  year = {2012},
  doi = {10.1007/978-3-642-33122-0_33},
  publisher = {Springer Berlin Heidelberg},
  volume = {7534},
  pages = {417-429},
  address = {Ljubljana, Slovenia},
  doi = {10.1007/978-3-642-33122-0_33},
  x-international-audience = {yes},
  x-proceedings = {yes},
  url = {http://hal.inria.fr/hal-00749019},
  x-id-hal = {hal-00749019}
}
@inproceedings{thomas:hal-00749026,
  author = {Thomas, Antoine and Ouangraoua, A{\"\i}da and Varr{\'e}, Jean-St{\'e}phane},
  title = {{Genome Halving by Block Interchange}},
  booktitle = {{BIOINFORMATICS}},
  year = {2012},
  editor = {Jan Schier and Carlos Manuel B. A. Correia and Ana L. N. Fred and Hugo Gamboa},
  publisher = {SciTePress},
  pages = {58-65},
  address = {Lisboa, Portugal},
  x-international-audience = {yes},
  x-proceedings = {yes},
  url = {http://hal.inria.fr/hal-00749026},
  x-id-hal = {hal-00749026}
}
@inproceedings{ouangraoua:hal-00750028,
  author = {Ouangraoua, A{\"\i}da and Raffinot, Mathieu},
  title = {{Faster and Simpler Minimal Conflicting Set Identification.}},
  booktitle = {{Combinatorial Pattern Matching}},
  year = {2012},
  publisher = {Springer},
  volume = {7354},
  pages = {41-55},
  address = {Helsinki, Finland},
  doi = {10.1007/978-3-642-30191-9_19},
  x-international-audience = {yes},
  x-proceedings = {yes},
  url = {http://hal.inria.fr/hal-00750028},
  x-id-hal = {hal-00750028}
}
@inproceedings{ouangraoua:hal-00750031,
  author = {Ouangraoua, A{\"\i}da and Swenson, Krister and Bergeron, Anne},
  title = {{On the comparison of sets of alternative transcripts}},
  booktitle = {{International Symposium on Bioinformatics Research and Applications}},
  year = {2012},
  publisher = {Springer},
  volume = {7292},
  pages = {201-212},
  address = {Dallas, Germany},
  doi = {10.1007/978-3-642-30191-9_19},
  x-international-audience = {yes},
  x-proceedings = {yes},
  url = {http://hal.inria.fr/hal-00750031},
  x-id-hal = {hal-00750031}
}

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