2014.bib

@comment{{This file has been generated by bib2bib 1.97}}
@comment{{Command line: bib2bib -oc cite2014 -ob 2014.bib 2014.bib}}
@inproceedings{vroland:hal-01079840,
  title = {{Lossless seeds for searching short patterns with high error rates}},
  author = {Vroland, Christophe and Salson, Mikael and Touzet, Hélène},
  booktitle = {{International Workshop On Combinatorial Algorithms}},
  address = {Duluth, United States},
  year = {2014},
  month = oct,
  url = {https://hal.archives-ouvertes.fr/hal-01079840},
  hal_id = {hal-01079840},
  hal_version = {v1},
  x-proceedings = {yes},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-invited-conference = {no},
  x-scientific-popularization = {no}
}
@article{frith:hal-00958207,
  title = {{Improved search heuristics find 20 000 new alignments between human and mouse genomes.}},
  author = {Frith, Martin and Noé, Laurent},
  journal = {{Nucleic Acids Research}},
  publisher = {{Oxford University Press (OUP): Policy C - Option B}},
  volume = {42},
  number = {7},
  pages = {e59},
  year = {2014},
  month = feb,
  doi = {10.1093/nar/gku104},
  url = {https://hal.inria.fr/hal-00958207},
  hal_id = {hal-00958207},
  hal_version = {v1},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-scientific-popularization = {no}
}
@article{giraud:hal-01009173,
  title = {{Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing}},
  author = {Giraud, Mathieu and Salson, Mikaël and Duez, Marc and Villenet, Céline and Quief, Sabine and Caillault, Aurélie and Grardel, Nathalie and Roumier, Christophe and Preudhomme, Claude and Figeac, Martin},
  journal = {{BMC Genomics}},
  publisher = {{BioMed Central}},
  volume = {15},
  number = {1},
  pages = {409},
  year = {2014},
  doi = {10.1186/1471-2164-15-409},
  url = {https://hal.archives-ouvertes.fr/hal-01009173},
  pdf = {https://hal.archives-ouvertes.fr/hal-01009173/document},
  hal_id = {hal-01009173},
  hal_version = {v1},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-scientific-popularization = {no}
}
@article{noe:hal-01083204,
  title = {{A Coverage Criterion for Spaced Seeds and Its Applications to Support Vector Machine String Kernels and k-Mer Distances}},
  author = {Noé, Laurent and Martin, Donald E. K.},
  journal = {{Journal of Computational Biology}},
  publisher = {{Mary Ann Liebert}},
  volume = {21},
  number = {12},
  pages = {28},
  year = {2014},
  month = nov,
  doi = {10.1089/cmb.2014.0173},
  url = {https://hal.inria.fr/hal-01083204},
  pdf = {https://hal.inria.fr/hal-01083204/document},
  hal_id = {hal-01083204},
  hal_version = {v1},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-scientific-popularization = {no}
}
@article{giegerich:hal-01084318,
  title = {{Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems}},
  author = {Giegerich, Robert and Touzet, Hélène},
  journal = {{Algorithms}},
  publisher = {{MDPI}},
  volume = {7},
  pages = {62 - 144},
  year = {2014},
  doi = {10.3390/a7010062},
  url = {https://hal.archives-ouvertes.fr/hal-01084318},
  pdf = {https://hal.archives-ouvertes.fr/hal-01084318/document},
  hal_id = {hal-01084318},
  hal_version = {v1},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-scientific-popularization = {no}
}
@inproceedings{perrin:hal-01083841,
  title = {{ProCARs: Progressive Reconstruction of Ancestral Gene Orders}},
  author = {Perrin, Amandine and Varré, Jean-Stéphane and Blanquart, Samuel and Ouangraoua, Aïda},
  booktitle = {{ISCB-Latin America}},
  address = {Belo Horizonte, Brazil},
  year = {2014},
  month = oct,
  url = {https://hal.inria.fr/hal-01083841},
  pdf = {https://hal.inria.fr/hal-01083841/document},
  hal_id = {hal-01083841},
  hal_version = {v1},
  x-proceedings = {yes},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-invited-conference = {no},
  x-scientific-popularization = {no}
}
@inproceedings{saffarian:hal-01084319,
  title = {{Searching for alternate RNA structures in genomic sequences}},
  author = {Saffarian, Azadeh and Giraud, Mathieu and Touzet, Hélène},
  booktitle = {{Computational Methods for Structural RNAs, CMSR'14}},
  address = {Strasbourg, France},
  series = {1st workshop on Computational Methods for Structural RNAs},
  volume = {1},
  pages = {13-24},
  year = {2014},
  month = sep,
  doi = {10.15455/CMSR.2014.0002},
  url = {https://hal.archives-ouvertes.fr/hal-01084319},
  pdf = {https://hal.archives-ouvertes.fr/hal-01084319/document},
  hal_id = {hal-01084319},
  hal_version = {v1},
  x-proceedings = {yes},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-invited-conference = {no},
  x-scientific-popularization = {no}
}
@article{caradec:hal-01090619,
  title = {{Prediction of Monomer Isomery in Florine: A Workflow Dedicated to Nonribosomal Peptide Discovery}},
  author = {Caradec, Thibault and Pupin, Maude and Vanvlassenbroeck, Aurélien and Devignes, Marie-Dominique and Smaïl-Tabbone, Malika and Jacques, Philippe and Leclère, Valérie},
  journal = {{PLoS ONE}},
  publisher = {{Public Library of Science}},
  volume = {9},
  number = {1},
  pages = {e85667},
  year = {2014},
  month = jan,
  doi = {10.1371/journal.pone.0085667},
  url = {https://hal.archives-ouvertes.fr/hal-01090619},
  pdf = {https://hal.archives-ouvertes.fr/hal-01090619/document},
  hal_id = {hal-01090619},
  hal_version = {v1},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-scientific-popularization = {no}
}
@article{abdo:hal-01090611,
  title = {{Prediction of New Bioactive Molecules using a Bayesian Belief Network}},
  author = {Abdo, Ammar and Leclère, Valérie and Jacques, Philippe and Salim, Naomie and Pupin, Maude},
  journal = {{Journal of Chemical Information and Modeling}},
  publisher = {{American Chemical Society}},
  volume = {54},
  number = {1},
  pages = {30-36},
  year = {2014},
  month = jan,
  doi = {10.1021/ci4004909},
  url = {https://hal.archives-ouvertes.fr/hal-01090611},
  hal_id = {hal-01090611},
  hal_version = {v1},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-scientific-popularization = {no}
}
@inproceedings{kopylova:hal-01094029,
  title = {{SortMeRNA 2: ribosomal RNA classification for taxonomic assignation }},
  author = {Kopylova, Evguenia and Noé, Laurent and Pericard, Pierre and Touzet, Helene},
  booktitle = {{Bioinformatics for Environmental Genomics}},
  address = {Lyon, France},
  year = {2014},
  month = may,
  url = {https://hal.archives-ouvertes.fr/hal-01094029},
  hal_id = {hal-01094029},
  hal_version = {v1},
  x-proceedings = {no},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-invited-conference = {no},
  x-scientific-popularization = {no}
}
@inproceedings{kopylova:hal-01094011,
  title = {{SortMeRNA 2: ribosomal RNA classification for taxonomic assignation}},
  author = {Kopylova, Evguenia and Noé, Laurent and Pericard, Pierre and Salson, Mikael and Touzet, Helene},
  booktitle = {{Workshop on Recent Computational Advances in Metagenomics, ECCB 2014}},
  address = {Strasbourg, France},
  year = {2014},
  month = sep,
  url = {https://hal.archives-ouvertes.fr/hal-01094011},
  hal_id = {hal-01094011},
  hal_version = {v1},
  x-proceedings = {no},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-invited-conference = {no},
  x-scientific-popularization = {no}
}
@article{reisinger:hal-00924047,
  title = {{Evidence for the Existence of Elaborate Enzyme Complexes in the Paleoarchean Era}},
  author = {Reisinger, Bernd and Sperl, Josef and Holinski, Alexandra and Schmid, Veronika and Rajendran, Chitra and Carstensen, Linn and Schlee, Sandra and Blanquart, Samuel and Merkl, Rainer and Sterner, Reinhard},
  journal = {{Journal of the American Chemical Society}},
  publisher = {{American Chemical Society}},
  pages = {122-9},
  year = {2014},
  month = jan,
  doi = {10.1021/ja4115677},
  url = {https://hal.inria.fr/hal-00924047},
  pdf = {https://hal.inria.fr/hal-00924047/document},
  hal_id = {hal-00924047},
  hal_version = {v1},
  x-international-audience = {yes},
  x-editorial-board = {yes},
  x-scientific-popularization = {no}
}

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