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Mathieu Giraud

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mathieu.giraud [at] lifl.fr
PhD, chargé de recherche (associate researcher) CNRS


Contact information

Recent news

2013 News (show)

2012 News (show)

Research interests : text algorithms for bioinformatics and musicology

Bioinformatics

I am a member of the Bonsai bioinformatics group (Pr. Hélène Touzet) at LIFL / INRIA Lille, mainly working on NGS algorithms.

Research topics

  • NGS algorithms and indexation, especialy for hematology and leukemia analysis, together with Mikaël Salson
  • RNA patterns, RNA suboptimal structures, ncRNA discovery
  • GPU/manycore high-performance computing in bioinformatics

Past research themes

  • FPGA and reconfigurable computing (2004-2007)
  • weigthed finite automata, epsilon-transitions (2004-2006)
  • identification of the canine olfactive repertory (2004-2005)

Computer musicology

I am the head of the "Algorithmic musicology" exploratory action at LIFL/MIS. We focus on computational analysis of symbolic scores : given a music score (for example MIDI or .krn file), we aim to compute several analyses, ultimately studying the high-level structure of music. We try to propose models and methods that are both algorithmically efficient and musically pertinent.

Research topics

  • modeling and comparison of symbolic musical sequences: patterns, harmony, rhythms
  • structure analysis : fugues, sonata forms...
See the Algomus website.

Software and tools

PhD Students

Administrative activities

Master/PhD proposals

Je propose en 2014 une thèse et deux stages de recherche pour M2 ou école d'ingénieur: Excellent students in algorithms for bioinformatics or for musicology interested in some of my research themes can always contact me. Please send a curriculum vitae.

Teaching and popular science (French)

Publications

Short Bio

Mathieu Giraud is a CNRS Associate Researcher in the Laboratoire d'Informatique Fondamentale de Lille (LIFL), the departement of Computer Science of the Université Lille 1, in France. He is also a member of the joint Bonsai project with the Institut National de Recherche en Informatique et Automatique (INRIA). He serves as member of the INRIA national evaluation board.

He obtained a MS in École Normale Supérieure de Lyon in 2002, and a PhD from the University Rennes 1 in 2005. He worked on weighted automata and specialized architectures using FPGAs. His current research interests target text algorithms, bioinformatics, RNA bioinformatics, high-performance computing using GPUs and many-cores architectures, and computer musicology.

Positions and education

Last update : winter 2014

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