contact: evguenia.kopylova AT lifl[dot]fr
address: Laboratoire d'Informatique Fondamentale de Lille
UMR CNRS 8022, Bat. M3
Université
Lille 1
Cité Scientifique
59655
Villeneuve d'Ascq Cedex - France
group:
Bonsai
at LIFL and Inria Lille - Nord Europe
About Me
I'm a Ph.D. student in Computer Science (3rd year) under the co-supervision of Hélène Touzet and Laurent Noé. My thesis research focuses on developing new bioinformatic approaches for the analysis of NGS (meta) data and is associated with the Tara Oceans Expedition. I have completed my Bachelor (Physics/Math) and Master (Computer Science) degrees at McMaster University in Canada, written thesis under the supervision of W.F. Smyth.
Software
SortMeRNA: a fast & sensitive rRNA filter for metatranscriptomic reads (Illumina and 454)
Publications
Al-Hafeedh A., Crochemore M., Ilie L.,
Kopylova E., Smyth W.F., Tischler G. and Yusufu M., "A comparison
of indexed-based Lempel-Ziv LZ77 factorization
algorithms", ACM Computing Surveys (2012), 45-1
Kopylova E., Noé L. and Touzet
H., "SortMeRNA: Fast and accurate filtering of ribosomal RNAs in
metatranscriptomic data", Bioinformatics (2012), doi:
10.1093/bioinformatics/bts611
Kopylova E. and Smyth W.F., "The Three Squares Lemma
Revisited", J. Discrete Algorithms (2012)
11:3-14
Kopylova E., "Computing Repetitions in Strings: Current Algorithms
& the Combinatorics of Future Ones", Open Access
Dissertations and Theses, McMaster University (2010)
Talks
JOBIM 2012 (3-6 July in Rennes, France)
LSD/LAW 2012 (9-10 February in London, UK)
StringMasters 2011 (31 Jan - 2 Feb in Rouen, France)
SeqBio 2011 (8-9 December in Lille, France)
IWOCA 2010 (26-28
July in London, UK) - open problems session
Other
Languages: Russian (native), English (fluent), French (B2), Italian (B1)