genewise $Name: wise2-2-0 $ (unreleased release) This program is freely distributed under a GPL. See source directory Copyright (c) GRL limited: portions of the code are from separate copyright Query protein: gi|324502916|gb|ADY41274.1| Comp Matrix: blosum62.bla Gap open: 12 Gap extension: 2 Start/End default Target Sequence gi|351002772|emb|CADV01009238.1| Strand: both Start/End (protein) default Gene Paras: human.gf Codon Table: codon.table Subs error: 1e-05 Indel error: 1e-05 Model splice? model Model codon bias? flat Model intron bias? tied Null model syn Algorithm 623 genewise output Score 20.19 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|324502916|gb 234 LDYYADESVNMQSFIPN ++++A +S N+Q+F PN VNFFAKKSKNLQNFRPN gi|351002772|em 6161 gattgaataaccatcca tattcaacaataatgca attttaaaatcatcttt // genewise output Score 635.46 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|324502916|gb 67 YQDVPLVRLTRDLLAKERYDVRVRPISNHSAPLKIHISMSLYQIIDVNE + VP VRLTRD+L RYD+RVRP+ NHS PLKI+ISMSLYQ+IDVNE HDQVPQVRLTRDILGPGRYDIRVRPVQNHSRPLKIYISMSLYQLIDVNE gi|351002772|em-4649 cgcgccgctacgacgcgatgacgccgcactaccaataaaattccaggag aaatcatgtcgattgcggaatgtgctaaacgctatatgtgtaattataa ttactatggcctcttctatccgtagtgtcaacgaccccgtgtgattgcg gi|324502916|gb 116 PSQNIKMNMWMIQKWSDEMLDWNPQEYGMINSTILPHSSLWIPDTY PSQ I+MNMWMIQKW DEMLDW+P++Y MIN+TILPH+ +WIPDTY PSQFIQMNMWMIQKWEDEMLDWDPRDYSMINTTILPHNVIWIPDTY gi|351002772|em-4502 ctctacaaataacatgggacgtgcagtaaaaaaacccagatacgat ccattatatgttaagaaattagacgaagttaccttcaattgtcaca tgactagcgggtgagatgggtgtgatctgcccgcggttgcgtgctt gi|324502916|gb 162 LYNSVVMSRDETERYMNVQVASRYWE LYNSVVM+ DETERYMN++ + +WE LYNSVVMAADETERYMNIRADTLFWE gi|351002772|em-4364 GTGAGTT Intron 1 CAGctaaggaggggagctaaacggacttg <0-----[4364 : 4295]-0>taagtttccaacagatatgcacttga cccttggcccgggccgcaagcattgg gi|324502916|gb 188 GKPGANMSFLYPAIYTVTCRLNVRYFPYDQQNCTLTISSWTNSKSALDY G+ G+++SFLYPAIYTVTCRLN+RYFPYDQQNCTLTISSWTNSKSALDY GRRGSHISFLYPAIYTVTCRLNIRYFPYDQQNCTLTISSWTNSKSALDY gi|351002772|em-4216 gccgtcattttcgatagatccaacttctgccatacaaattaaaatgtgt ggggcatcttacctactcggtatgatcaaaaagctctgcgcagacctaa ttaattactgtacccactttgtcactgctggtcgatccggcctagaatt gi|324502916|gb 237 YADESVNMQSFIPNEEWDVMSFKVYRHE YAD VNM SFIPNEEW V+SFKV+RHE YADPEVNMASFIPNEEWKVISFKVFRHE gi|351002772|em-4069 tggcggaagttacaggtagattagtccgGTAAGTG Intron 2 acacatatccttcaaagattctattgaa<0-----[3985 : 2863] ttcaaacgcgttgtgaggcagcggtatg gi|324502916|gb 265 YKYACCSEPWVIIEASLVIRRKPLYYVVNLIIPTSIITIVSITGFF YKYACC EPWVI+EAS+VIRRKPLYYVVNLIIPTSIIT+VSITGFF YKYACCPEPWVILEASIVIRRKPLYYVVNLIIPTSIITLVSITGFF gi|351002772|em-2865 CAGtatgttcgctgacggtagaccaccttggataacataaacgtaagtt -0>aaacggcacgtttacctttggactaattatttcccttcttctcgtt caccttggtggtgaagtccccatgtccgtgcccctctatcatgccc gi|324502916|gb 311 TPASTSDDRTEKIDLGITT LLAMSIL TPAST+DDRTEKI+LGITT LLAMSIL TPASTADDRTEKINLGITT LLAMSIL gi|351002772|em-2724 acgaagggcagaaacgaaaGTAGGTC Intron 3 CAGccgatat cccgccaagcaatatgtcc<0-----[2667 : 2621]-0>ttctctt cgccgcctggggccctttt ttcgctg gi|324502916|gb 337 MLMVSDQMPTTSEFVPLI WFYLS MLM+SDQMPTTS+F+PLI WFYLS MLMISDQMPTTSDFIPLI A:A[gca] WFYLS gi|351002772|em-2599 ataatgcacaatgtactaGGTAAGCG Intron 4 CAGCAtttct ttttcaatccccattctt <1-----[2544 : 2506]-1> gtatc gggcgtggaaacttatat gcccg gi|324502916|gb 361 IIIIVSIGTFLTSIVLSVQGRRKFGKMPTEIVRVVFFVYIAHWMCLSVP IIII+SIGTFLTS++LS+QGRR++GK+P VR FF + W+C+ VP IIIIISIGTFLTSVILSIQGRRQYGKVPPIYVRYWFFCKFTAWFCVGVP gi|351002772|em-2488 aaaaatagatcaagataacgccctgagccatgatttttatagtttgggc tttttctgcttcgtttgtagggaagatcctatgagttgatccgtgtgtc cccccgtcccaccctgttagtagcaagtgcctatgcccactcgcctgcg gi|324502916|gb 410 SQLLQLWDELN L LW+EL+ PPLAVLWEELH gi|351002772|em-2341 cccggttggtc cctcttgaata agggtagaggt //