NCBI Blast:Gasterosteus aculeatus cDNA clone CLJ188-G12...

wgs - organisms
Organim inclusion	Organims name
Included:	Gasterosteus aculeatus (taxid:69293)
Excluded:

Blast search databases information
Database	Organism
WGS/wgs.AANH	Gasterosteus aculeatus

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	11
Expect value	10
Hitlist size	100
Match/Mismatch scores	2,-3
Gapcosts	5,2
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1
Template length	18
Window Size	40

Database
Database parameter name	Database parameter value
Posted date	Jul 11, 2012 4:36 AM
Number of letters	446,610,788
Number of sequences	16,957
Entrez query	none

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	0.633731	0.625
K	0.408146	0.41
H	0.912438	0.78

Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	31
Effective length of query	1251
Effective length of database	446085121
Effective search space	558052486371
Effective search space used	558052486371

Sequences producing significant alignments:
Accession	Description	Max score	Total score	Query coverage	E value	Max ident	Links
AANH01011149.1	Gasterosteus aculeatus cont1.011148, whole genome shotgun sequence	351	2182	83%	1e-94	100%

Alignments


>gb|AANH01011149.1|  Gasterosteus aculeatus cont1.011148, whole genome shotgun sequence
Length=99385


                                                         Sort alignments for this subject sequence by:
                                                           E value  Score  Percent identity
                                                           Query start position  Subject start position
 Score =   351 bits (388),  Expect = 1e-94
 Identities = 194/194 (100%), Gaps = 0/194 (0%)
 Strand=Plus/Minus

Query  204    GGTCACTCCGACAACGGGGCTTCCTGGCGCTCCCTGTATGAAACCCCCAGCTTCGAGGAG  263
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  69184  GGTCACTCCGACAACGGGGCTTCCTGGCGCTCCCTGTATGAAACCCCCAGCTTCGAGGAG  69125

Query  264    GACCTGGAGGCTCTGTGGAAGGAGCTGGAGCCGCTCTATCAGAATGTGCACGCCTATGTG  323
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  69124  GACCTGGAGGCTCTGTGGAAGGAGCTGGAGCCGCTCTATCAGAATGTGCACGCCTATGTG  69065

Query  324    CGCAGGGCCCTGTACAAAAAGTATGGCTCCCAGCACATCAACCTGAAGGGAGCCATCCCG  383
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  69064  CGCAGGGCCCTGTACAAAAAGTATGGCTCCCAGCACATCAACCTGAAGGGAGCCATCCCG  69005

Query  384    GCTCATTTGCTGGG  397
              ||||||||||||||
Sbjct  69004  GCTCATTTGCTGGG  68991


 Score =   320 bits (354),  Expect = 2e-85
 Identities = 180/182 (99%), Gaps = 0/182 (0%)
 Strand=Plus/Minus

Query  490    CACAGGGCTGGAACGCCACCAGAATGTTCCAGGAATCCGACAATTTTTTCACCTCTCTGG  549
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  68204  CACAGGGCTGGAACGCCACCAGAATGTTCCAGGAATCCGACAATTTTTTCACCTCTCTGG  68145

Query  550    GTCTTTTGCCAATGCCCCAAGAGTTCTGGGACAAATCCATGCTAGAGAAGCCGTCTGGTG  609
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  68144  GTCTTTTGCCAATGCCCCAAGAGTTCTGGGACAAATCCATGCTAGAGAAGCCGTCTGGTG  68085

Query  610    GACGCCAGGTGGTGTGCCACGCCTCCGCATGGGACTTCTATAACCGAAAAGACTTCAGGA  669
              |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| 
Sbjct  68084  GACGCCAGGTGGTGTGCCACGCCTCCGCGTGGGACTTCTATAACCGAAAAGACTTCAGGT  68025

Query  670    TC  671
              ||
Sbjct  68024  TC  68023


 Score =   266 bits (294),  Expect = 4e-69
 Identities = 147/147 (100%), Gaps = 0/147 (0%)
 Strand=Plus/Minus

Query  60     GATCTTCAGAAGATCATGGCGGAGTCCAGGGATTATGACGAACTGCTGTTTGCGTGGAAA  119
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  69675  GATCTTCAGAAGATCATGGCGGAGTCCAGGGATTATGACGAACTGCTGTTTGCGTGGAAA  69616

Query  120    GGATGGAGAGATTCTGCCGGCAAAGTGCTTCGCCAGGATTACAAGAGATATGTTGAACTG  179
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  69615  GGATGGAGAGATTCTGCCGGCAAAGTGCTTCGCCAGGATTACAAGAGATATGTTGAACTG  69556

Query  180    GCCAACATGGCCGCCAAACTCAACGGT  206
              |||||||||||||||||||||||||||
Sbjct  69555  GCCAACATGGCCGCCAAACTCAACGGT  69529


 Score =   206 bits (228),  Expect = 3e-51
 Identities = 135/147 (92%), Gaps = 2/147 (1%)
 Strand=Plus/Minus

Query  891    GAGAGCGATATCAACTTCCTGATGAGCATGGCGCTCGACAAGATCGCCTTCTTACCCTTT  950
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct  67574  GAGAGCGATATCAACTTCCTGATGAGCATGGCGCTCGACAAGATCGCCTTCTTACCTTTC  67515

Query  951    CGCTACCTGATGGATCAGTGNAGATGGAAGGGTGTCGATGGNCGTATCCCATCGACTGAG  1010
               ||||||||||||||||||| ||||||||||   ||||||| ||||||||||||||||||
Sbjct  67514  GGCTACCTGATGGATCAGTGGAGATGGAAGGTGTTCGATGGGCGTATCCCATCGACTGAG  67455

Query  1011   TANCATAAAGAATGGNTGGAA-CTCAG  1036
              ||  ||||||||||| ||||| |||||
Sbjct  67454  TACAATAAAGAATGG-TGGAACCTCAG  67429


 Score =   181 bits (200),  Expect = 1e-43
 Identities = 100/100 (100%), Gaps = 0/100 (0%)
 Strand=Plus/Minus

Query  396    GGCAACATGTGGGCCCAGACGTGGTCGGGCATAATGGATTTGGTCATGCCCTACCCGCAT  455
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  68636  GGCAACATGTGGGCCCAGACGTGGTCGGGCATAATGGATTTGGTCATGCCCTACCCGCAT  68577

Query  456    GCCACGCAGGTGGACGCCACGCCCGCCATGGTTTCACAGG  495
              ||||||||||||||||||||||||||||||||||||||||
Sbjct  68576  GCCACGCAGGTGGACGCCACGCCCGCCATGGTTTCACAGG  68537


 Score =   132 bits (146),  Expect = 5e-29
 Identities = 92/101 (91%), Gaps = 3/101 (3%)
 Strand=Plus/Minus

Query  1034   CAGAATGAAGTACCAGGGCCTCTGTCCCACTGTAACCCGCACAGAGGAAGACTTCGA-CC  1092
              |||||||||||||||||||||||||||  ||||||||||||||||||| |||||||| ||
Sbjct  67333  CAGAATGAAGTACCAGGGCCTCTGTCCACCTGTAACCCGCACAGAGGAGGACTTCGACCC  67274

Query  1093   ANGTGCAAAAGT-CACATCCCTGCT-ACGTGCCATACGTGA  1131
              | |||||||  | |||||||||||| |||||||||||||||
Sbjct  67273  AGGTGCAAAGTTCCACATCCCTGCTAACGTGCCATACGTGA  67233


 Score =   129 bits (142),  Expect = 7e-28
 Identities = 73/74 (99%), Gaps = 0/74 (0%)
 Strand=Plus/Minus

Query  767    ACGCCCTGATCACGGCGCACCATGAGATGGGCCACATTCAGTACTTCCTGCAGTACAAAG  826
              ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  67845  ACGACCTGATCACGGCGCACCATGAGATGGGCCACATTCAGTACTTCCTGCAGTACAAAG  67786

Query  827    ACCAGCCCGTGTCC  840
              ||||||||||||||
Sbjct  67785  ACCAGCCCGTGTCC  67772


 Score =   125 bits (138),  Expect = 8e-27
 Identities = 71/72 (99%), Gaps = 0/72 (0%)
 Strand=Plus/Minus

Query  701    TTCCGCGACGGAGCCAACCCCGGCTTCCACGAGGCCATTGGCGACGTGTTGGCCCTGTCA  760
              |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  67771  TTCCGCGACGGAGCCAACCCCGGCTTCCACGAGGCCATCGGCGACGTGTTGGCCCTGTCA  67712

Query  761    GTGTCTACGCCC  772
              ||||||||||||
Sbjct  67711  GTGTCTACGCCC  67700


 Score = 96.9 bits (106),  Expect = 4e-18
 Identities = 128/177 (72%), Gaps = 3/177 (2%)
 Strand=Plus/Minus

Query  492    CAGGGCTGGAACGCCACCAGAATGTTCCAGGAATCCGACAATTTTTTCACCTCTCTGGGT  551
              |||||||  ||||||||  | |||||||  |   ||||  | || ||||||||||||   
Sbjct  73135  CAGGGCTACAACGCCACGCGCATGTTCCGTGTGGCCGAGGAGTTCTTCACCTCTCTGAAC  73076

Query  552    CTTTTGCCAATGCCCCAAGAGTTCTGGGACAAATCCATGCTAGAGAAGCCGTCTGGTGGA  611
               |   |   ||||| || ||||||||||||   || ||||| | ||||||    |||   
Sbjct  73075  TTGGAGGAGATGCCTCAGGAGTTCTGGGACCGGTCTATGCTGGTGAAGCCCGAAGGT---  73019

Query  612    CGCCAGGTGGTGTGCCACGCCTCCGCATGGGACTTCTATAACCGAAAAGACTTCAGG  668
              ||  | ||||||||||| || ||||| |||||||| || ||||| | ||||||||||
Sbjct  73018  CGTGAAGTGGTGTGCCATGCGTCCGCCTGGGACTTTTACAACCGCAGAGACTTCAGG  72962


 Score = 95.1 bits (104),  Expect = 1e-17
 Identities = 52/52 (100%), Gaps = 0/52 (0%)
 Strand=Plus/Minus

Query  840    CCCAAACACCTGCAGAGCATCGGCCTGCTGGACAAAGTGGAGAGCAACCATG  891
              ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  67702  CCCAAACACCTGCAGAGCATCGGCCTGCTGGACAAAGTGGAGAGCAACCATG  67651


 Score = 82.4 bits (90),  Expect = 9e-14
 Identities = 60/70 (86%), Gaps = 0/70 (0%)
 Strand=Plus/Minus

Query  703    CCGCGACGGAGCCAACCCCGGCTTCCACGAGGCCATTGGCGACGTGTTGGCCCTGTCAGT  762
              ||||  |||||||||||||||||||||||||||||| |||||||||||| | || || ||
Sbjct  72724  CCGCAGCGGAGCCAACCCCGGCTTCCACGAGGCCATCGGCGACGTGTTGTCTCTCTCCGT  72665

Query  763    GTCTACGCCC  772
               || || |||
Sbjct  72664  TTCCACCCCC  72655


 Score = 71.6 bits (78),  Expect = 2e-10
 Identities = 39/39 (100%), Gaps = 0/39 (0%)
 Strand=Plus/Minus

Query  662    CTTCAGGATCAAACAGTGCACCGTGGTGACTATGGACGA  700
              |||||||||||||||||||||||||||||||||||||||
Sbjct  67880  CTTCAGGATCAAACAGTGCACCGTGGTGACTATGGACGA  67842


 Score = 64.4 bits (70),  Expect = 2e-08
 Identities = 47/55 (85%), Gaps = 0/55 (0%)
 Strand=Plus/Minus

Query  783    GCACCATGAGATGGGCCACATTCAGTACTTCCTGCAGTACAAAGACCAGCCCGTG  837
              |||||| |||||||| ||||| || || | |||||||||||| |||||||| |||
Sbjct  72784  GCACCACGAGATGGGGCACATCCAATATTACCTGCAGTACAAGGACCAGCCGGTG  72730


 Score = 57.2 bits (62),  Expect = 3e-06
 Identities = 61/81 (75%), Gaps = 0/81 (0%)
 Strand=Plus/Minus

Query  897    GATATCAACTTCCTGATGAGCATGGCGCTCGACAAGATCGCCTTCTTACCCTTTCGCTAC  956
              |||| |||||  ||  | |  ||||| || || ||||| |||||| | || ||| |||||
Sbjct  72489  GATACCAACTATCTTTTAAAGATGGCCCTGGAGAAGATAGCCTTCCTTCCTTTTGGCTAC  72430

Query  957    CTGATGGATCAGTGNAGATGG  977
              || || || ||||| ||||||
Sbjct  72429  CTCATCGACCAGTGGAGATGG  72409

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Gasterosteus aculeatus cDNA clone CLJ188-G12...

Graphic Summary

Distribution of 14 Blast Hits on the Query Sequence [?]

Descriptions

Alignments