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Format for	PSI-BLAST with inclusion threshold: [?] Format for PSI-BLAST: The Position-Specific Iterated BLAST (PSI-BLAST) program performs iterative searches with a protein query, in which sequences found in one round of search are used to build a custom score model for the next round. more... Inclusion Threshold: This sets the statistical significance threshold for including a sequence in the model used by PSI-BLAST to create the PSSM on the next iteration.

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Alignment Text XML ASN.1 Hit Table(text) Hit Table(csv)	Search Strategies ASN.1	PssmWithParameters ASN.1	[?]

The Download link provides BLAST output that may be used as input to another program. This includes parseable formats such as the tabular report or XML as well as the Search Strategy files read by the BLAST+ applications. More details on the parseable (XML, tabular, and ASN.1) reports can be found at http://www.ncbi.nlm.nih.gov/books/NBK21097/

The following formats are offered under the Alignment section:
1). "Text". Non-HTML standard BLAST report.
2). "XML". XML report based upon the DTD at http://www.ncbi.nlm.nih.gov/data_specs/dtd/NCBI_BlastOutput.dtd
3). "ASN.1" Alignment. This is the alignment written out in Abstract Syntax Notation 1.
4). "Hit Table(text)". The tabular report as text.
5). "Hit Table(csv)". The tabular report ready for import into spread-sheet programs like Excel.

The following report is offered under the Search Strategy section:
1). "ASN.1" Search Strategy. A record of the parameters, query, and database used in the search. This file can be used to start a stand-alone BLAST search, see http://www.ncbi.nlm.nih.gov/books/NBK1763/#CmdLineAppsManual.I455_BLAST_search_stra

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gi|23491792|dbj|AB073985.3| Seriola quinqueradiata...

Query ID: lcl|15019; lcl|15019
Description: gi|23491792|dbj|AB073985.3| Seriola quinqueradiata MAKORIN1 gene for gene encoding protein featuring ring-finger, complete cds
Molecule type: nucleic acid
Query Length: 12731

Database Name
Description: See details
Program: BLASTN 2.2.27+ Citation

No significant similarity found. For reasons why,click here

Other reports: Search Summary

Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	7
Expect value	10
Hitlist size	100
Match/Mismatch scores	2,-3
Gapcosts	5,2
Low Complexity Filter	Yes
Filter string	L;m;
Genetic Code	1

Database
Database parameter name	Database parameter value
Posted date
Number of letters	0
Number of sequences	0
Entrez query	none

Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda
K
H

Results Statistics
Results Statistics parameter name	Results Statistics parameter value

Basic Local Alignment Search Tool

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gi|23491792|dbj|AB073985.3| Seriola quinqueradiata...

Graphic Summary

Distribution of Blast Hits on the Query Sequence [?]

Descriptions

Alignments