genewise $Name: wise2-2-0 $ (unreleased release) This program is freely distributed under a GPL. See source directory Copyright (c) GRL limited: portions of the code are from separate copyright Query protein: gi|21071008|ref|NP_001053.2| Comp Matrix: blosum62.bla Gap open: 12 Gap extension: 2 Start/End default Target Sequence Hs.2012 Strand: forward Start/End (protein) default Gene Paras: human.gf Codon Table: codon.table Subs error: 1e-05 Indel error: 1e-05 Model splice? model Model codon bias? flat Model intron bias? tied Null model syn Algorithm 623 genewise output Score 939.23 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info gi|21071008|ref 1 MRQSHQLPLVGLLLFSFIPSQLCEIC MRQSHQLPLVGLLLFSFIPSQLCEIC MRQSHQLPLVGLLLFSFIPSQLCEIC E:E[gag] Hs.2012 2076 aactcccccggctctttacacctgatGGTGAGTA Intron 1 tgacaatcttgttttcttcgatgatg <1-----[2155 : 4459] gagacggcaggcagttttacaacgtt gi|21071008|ref 27 VSEENYIRLKPLLNTMIQSNYNRGTSAVNVVLSLKLVGIQIQTL VSEENYIRLKPLLNTMIQSNYNRGTSAVNVVLSLKLVGIQIQTL VSEENYIRLKPLLNTMIQSNYNRGTSAVNVVLSLKLVGIQIQTL Hs.2012 4457 CAGAGgaggataccacctaaaactataagaaggaggttcacggacacac -1> tgaaaatgtacttacttacaaaggcgctatttctattgtatact ataaccccaatggtagcgactcgacctcttggccattacgcacg gi|21071008|ref 72 MQKMIQQIKYNVKSR SDVSSGEL MQKMIQQIKYNVKSR SDVSSGEL MQKMIQQIKYNVKSR L:L[ttg] SDVSSGEL Hs.2012 4594 acaaaccaatagaaaTGTAAGTT Intron 2 CAGTGtggatggc taattaataaatagg <1-----[4640 : 5823]-1> catgcgat gaggcaacactgaca atacgagt gi|21071008|ref 96 ALIILALGVCRNAEENLIYDYHLIDKLENKFQAEIENM ALIILALGVCRNAEENLIYDYHLIDKLENKFQAEIENM ALIILALGVCRNAEENLIYDYHLIDKLENKFQAEIENM Hs.2012 5850 gtaacgtggtcagggatatgtccagacgaatcggagaa cttttctgtggacaaattaaaattaataaatacataat cgtagtgaattctgacaattccgccgaatacaaatatg gi|21071008|ref 134 AHNGTPLTNYYQLSLDVLALCLF AHNGTPLTNYYQLSLDVLALCLF E:E[gaa] AHNGTPLTNYYQLSLDVLALCLF Hs.2012 5964 GGTAAGAA Intron 3 TAGAAgcagaccaattccacggtgttct <1-----[5965 : 6863]-1> caagcctcaaaatgtattctgtt actctcgtcccgccgctgcgtgc gi|21071008|ref 158 NGNYSTAEVVNHFTPENKNYYFGSQFSV NGNYSTAEVVNHFTPENKNYYFGSQFSV NGNYSTAEVVNHFTPENKNYYFGSQFSV D:D[gat] Hs.2012 6935 agattaggggactacgaaatttgacttgGGTGAGTT Intron 4 agaacccattaatccaaaaaatggatct <1-----[7020 : 9278] tgccaccatccccttatacttttcgcaa gi|21071008|ref 186 TGAMAVLALTCVKKSLINGQIKADEGSLKNISIYTKSLVEKILS TGAMAVLALTCVKKSLINGQIKADEGSLKNISIYTKSLVEKILS TGAMAVLALTCVKKSLINGQIKADEGSLKNISIYTKSLVEKILS Hs.2012 9276 CAGATaggaggcgcatgaaacaagcaaggggataaaaataatcggaact -1> cgctcttctcgtaagttagatacaaggtaatgtacacttaattc ttagtcgtgctgggtaatggcaatactagcctttagagaagtgt gi|21071008|ref 231 EKKENGLIGNTFSTGEAMQ ALFVSSD EKKENGLIGNTFSTGEAMQ ALFVSSD EKKENGLIGNTFSTGEAMQ ALFVSSD Hs.2012 9413 gaagagcagaataagggacGTAAGTC Intron 5 TAGgctgttg aaaaagttgactgcgacta<0-----[9470 :12487]-0>ctttcca gaaattctacatcaaacgg cctaaac gi|21071008|ref 257 YYNENDWNCQQTLNTVLTEISQGAFSNPNAAAQVLPALMGKTFLDINKD YYNENDWNCQQTLNTVLTEISQGAFSNPNAAAQVLPALMGKTFLDINKD YYNENDWNCQQTLNTVLTEISQGAFSNPNAAAQVLPALMGKTFLDINKD Hs.2012 12509 ttagagtatccacaagcagatcggtaacagggcgtcgcagaattgaaag aaaaaagagaactacttcatcagctgacacccattccttgacttataaa tttatcgtcaatgtagcgattaaacctactacgcatcggagccgttcac gi|21071008|ref 306 SSCVSAS NFNISADEPITVTPPD SSCVSAS NFNISADEPITVTPPD SSCVSAS G:G[ggt] NFNISADEPITVTPPD Hs.2012 12656 tttgtgtGGTATAAG Intron 6 CAGGTataatgggcaagaccg ccgtccc <1-----[12678:13710]-1> atatccaactctccca ttcctta cccccttgtatgattc gi|21071008|ref 330 SQSYISVNYSVRINETYFTNVTVLNGSVFLSVMEKAQKMNDTIF SQSYISVNYSVRINETYFTNVTVLNGSVFLSVMEKAQKMNDTIF SQSYISVNYSVRINETYFTNVTVLNGSVFLSVMEKAQKMNDTIF Hs.2012 13761 tcttatgattgaaagattaagagcagtgtcagagagcaaagaat cacatctaactgtaacatcatcttagctttgttaacaataactt aaatccctctgactaatcctctgatttccctgggacgagtttat gi|21071008|ref 374 FTMEERSWGPYITCIQGLCANNN FTMEERSWGPYITCIQGLCANNN G:G[ggt] FTMEERSWGPYITCIQGLCANNN Hs.2012 13893 GGGTAGGTC Intron 7 CAGTtaaggcttgctaatacgctgaaa <2-----[13895:15224]-2> tctaagcggcatcgtagtgcaaa cagggcaggctccttgcatcctt gi|21071008|ref 398 DRTYWELLSGGEPLSQ AGSYVVR DRTYWELLSGGEPLSQ AGSYVVR DRTYWELLSGGEPLSQ G:G[gga] AGSYVVR Hs.2012 15295 gaattgccagggccacGGTAAGGG Intron 8 CAGGAggatggc agcagattgggactga <1-----[15344:15509]-1> cggattg caccgatgtacaagca tttctcc gi|21071008|ref 422 NGENLEVRWSKY NGENLEVRWSKY NGENLEVRWSKY Hs.2012 15533 aggatggctaat agaatatgggaa taacggtcgcac //