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| Comparaison de deux séquences
nucléiques : Sequence 1 : Sequence personnelle : mRNA (Query) Sequence 2 : Sequence personnelle : gene (Query) |
LFASTA compares two sequences
v2.1u00 Mar, 2001
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
searching /tmp/tmpweb/analseq/al72082/s2 library
Comparison of:
(A) MRNA
(B) GENE
using matrix file DNA
99.931% identity in 1457 nt overlap; init: 7275, opt: 7276
1110 1120 1130 1140 1150 1160
mRNA CGGAACTCGAGGCGAACGCCGCTGTGGGACATCTACGACGAGAGGGAAAGCACCGACTCC
: X:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CAGAACTCGAGGCGAACGCCGCTGTGGGACATCTACGACGAGAGGGAAAGCACCGACTCC
11280 11290 11300 11310 11320 11330
1170 1180 1190 1200 1210 1220
mRNA TTCGACAACGAGGATGAGGAGATGGTGACGTTTGAGCTGAGCGAGATGCTCCTCATGCTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TTCGACAACGAGGATGAGGAGATGGTGACGTTTGAGCTGAGCGAGATGCTCCTCATGCTG
11340 11350 11360 11370 11380 11390
1230 1240 1250 1260 1270 1280
mRNA CTCGCCGCAGGAACCGACGACGAGGAGGTTATAATACGCCCCCCGAGCTGCGCTACTTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CTCGCCGCAGGAACCGACGACGAGGAGGTTATAATACGCCCCCCGAGCTGCGCTACTTCT
11400 11410 11420 11430 11440 11450
1290 1300 1310 1320 1330 1340
mRNA TCAGGCAGACTGGACCCTACAGTGACTCGGTATCGGAAGGCTTGCTAACCTCAGATGATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TCAGGCAGACTGGACCCTACAGTGACTCGGTATCGGAAGGCTTGCTAACCTCAGATGATG
11460 11470 11480 11490 11500 11510
1350 1360 1370 1380 1390 1400
mRNA ACAAAGTGACAGAAATAGAAGCAAAACAAGAGGTTTGCTTTTCCCCTGATGGAAGACAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene ACAAAGTGACAGAAATAGAAGCAAAACAAGAGGTTTGCTTTTCCCCTGATGGAAGACAGC
11520 11530 11540 11550 11560 11570
1410 1420 1430 1440 1450 1460
mRNA TGTTGGTGAGTAAAGGAATACAGTTTGATGCTGAACTCGCAACGTTTCTTCCGGACTGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TGTTGGTGAGTAAAGGAATACAGTTTGATGCTGAACTCGCAACGTTTCTTCCGGACTGGT
11580 11590 11600 11610 11620 11630
1470 1480 1490 1500 1510 1520
mRNA AAGCGAACAGCTGTTAATGCTAACGCTAGCTATGTAGCAATGGTAAAACAGCTCCTTTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene AAGCGAACAGCTGTTAATGCTAACGCTAGCTATGTAGCAATGGTAAAACAGCTCCTTTAA
11640 11650 11660 11670 11680 11690
1530 1540 1550 1560 1570 1580
mRNA AATTCTTAGTCAGTCTGAATGTTTCTGTTTGAGGGTCAAAACACGGTAATGTGAAATGTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene AATTCTTAGTCAGTCTGAATGTTTCTGTTTGAGGGTCAAAACACGGTAATGTGAAATGTT
11700 11710 11720 11730 11740 11750
1590 1600 1610 1620 1630 1640
mRNA TTGATCACAGTCACAAACAGAATTATCAGCACATCTGCAGCTTTTTATTGTCCGAGGTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TTGATCACAGTCACAAACAGAATTATCAGCACATCTGCAGCTTTTTATTGTCCGAGGTTT
11760 11770 11780 11790 11800 11810
1650 1660 1670 1680 1690 1700
mRNA TTGTTTTGGTTTGATCAGGCCCACAAACTCCACTGTTAACAGCCGTGTTTTCAGTGAAAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TTGTTTTGGTTTGATCAGGCCCACAAACTCCACTGTTAACAGCCGTGTTTTCAGTGAAAC
11820 11830 11840 11850 11860 11870
1710 1720 1730 1740 1750 1760
mRNA ACTTGCCCTGCACCAAACAGCCAGTCAACACAGTGAATTGTTTAACAGCTAGGTGAAATA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene ACTTGCCCTGCACCAAACAGCCAGTCAACACAGTGAATTGTTTAACAGCTAGGTGAAATA
11880 11890 11900 11910 11920 11930
1770 1780 1790 1800 1810 1820
mRNA AAATAATTGCACGCTGCTTTAAAACTACATTGCATTAGCTCTCCCAGATCATTTTATCAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene AAATAATTGCACGCTGCTTTAAAACTACATTGCATTAGCTCTCCCAGATCATTTTATCAT
11940 11950 11960 11970 11980 11990
1830 1840 1850 1860 1870 1880
mRNA CATATATATCATTTCCTCTCAACTCAGCAGCTCAAGCTTTCAAAAGTGTCAAAACATCAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CATATATATCATTTCCTCTCAACTCAGCAGCTCAAGCTTTCAAAAGTGTCAAAACATCAA
12000 12010 12020 12030 12040 12050
1890 1900 1910 1920 1930 1940
mRNA CAGCTGGGAGGAAATCTTAAAATTGTAATTTACACACACACACACACACACACCTGAGCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CAGCTGGGAGGAAATCTTAAAATTGTAATTTACACACACACACACACACACACCTGAGCC
12060 12070 12080 12090 12100 12110
1950 1960 1970 1980 1990 2000
mRNA AAACAGAAAGTGGCTGTGAGTTATGGTGGGGTCAACTCACGAGGTCTGTGATATTCTTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene AAACAGAAAGTGGCTGTGAGTTATGGTGGGGTCAACTCACGAGGTCTGTGATATTCTTGT
12120 12130 12140 12150 12160 12170
2010 2020 2030 2040 2050 2060
mRNA ATTAAACAAATTTAAAAAAAAATAATAATAATAATAAAACTCCACAACTCCTGCTCTTCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene ATTAAACAAATTTAAAAAAAAATAATAATAATAATAAAACTCCACAACTCCTGCTCTTCC
12180 12190 12200 12210 12220 12230
2070 2080 2090 2100 2110 2120
mRNA TGACCATGTGCAAACTTGCACTTTTTCATGTACATATCGTGTGTATCGTGTATATTGTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TGACCATGTGCAAACTTGCACTTTTTCATGTACATATCGTGTGTATCGTGTATATTGTAT
12240 12250 12260 12270 12280 12290
2130 2140 2150 2160 2170 2180
mRNA TTATTAGTGTATATTTGGTATATTTTTGTTGTATATTTCCATAGATGTTTTATTCTATAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TTATTAGTGTATATTTGGTATATTTTTGTTGTATATTTCCATAGATGTTTTATTCTATAG
12300 12310 12320 12330 12340 12350
2190 2200 2210 2220 2230 2240
mRNA ATGTTTATTTTCTGCTGTGGTAAATGAATTTCCCAGTTGTGGGATAAATAAAGTTAATCC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene ATGTTTATTTTCTGCTGTGGTAAATGAATTTCCCAGTTGTGGGATAAATAAAGTTAATCC
12360 12370 12380 12390 12400 12410
2250 2260 2270 2280 2290 2300
mRNA TAATCTAATCTAATCTAAATGTGGATTCTGAAAAAAAAAAAGGCTAGAGTAACAACAGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TAATCTAATCTAATCTAAATGTGGATTCTGAAAAAAAAAAAGGCTAGAGTAACAACAGAA
12420 12430 12440 12450 12460 12470
2310 2320 2330 2340 2350 2360
mRNA GGCTTCTACACTTTATTCGTTGTGTTATAACAACTTTAAATGTGTTGAATCCTTGAAGGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene GGCTTCTACACTTTATTCGTTGTGTTATAACAACTTTAAATGTGTTGAATCCTTGAAGGA
12480 12490 12500 12510 12520 12530
2370 2380 2390 2400 2410 2420
mRNA AAGAATTCATCAGGAAGGTTTTAAGCTCACCTACTCTTTGCCAATGTTGTTATTGCTTCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene AAGAATTCATCAGGAAGGTTTTAAGCTCACCTACTCTTTGCCAATGTTGTTATTGCTTCA
12540 12550 12560 12570 12580 12590
2430 2440 2450 2460 2470 2480
mRNA TATGGGGATGTAGTTTCACCATCTGTCAAACAAGGTCCTACAGCTTCTTGCCCTTTCTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TATGGGGATGTAGTTTCACCATCTGTCAAACAAGGTCCTACAGCTTCTTGCCCTTTCTTT
12600 12610 12620 12630 12640 12650
2490 2500 2510 2520 2530 2540
mRNA CTAATGCTCATCAGATAACATATTTAGATATAACCAAATTAAAAAGATTCATCAGTAATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CTAATGCTCATCAGATAACATATTTAGATATAACCAAATTAAAAAGATTCATCAGTAATG
12660 12670 12680 12690 12700 12710
2550 2560
mRNA ATTATGGACTAAATTCT
::::::::::::::::X
gene ATTATGGACTAAATTCT
12720 12730
----------
93.077% identity in 260 nt overlap; init: 1130, opt: 1138
380 390 400 410 420 430
mRNA TGAGTTTGTTCCAGGACAGCCATACTGTGGACGCGCTGAGCAAGCGAAGGTGGAGAGCTC
:: :: : : : ::: : : : : : : X:::::::::::::::::::::::::
gene TGTGTCTCTGTAATGACGGGCTTTCCTGCGTCCAGCTGAGCAAGCGAAGGTGGAGAGCTC
5310 5320 5330 5340 5350 5360
440 450 460 470 480 490
mRNA CGTCCCACTCATCGAGGAGTTCGACAGTTACCCGGCGCCAGATAACAAACAGCTGAGGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CGTCCCACTCATCGAGGAGTTCGACAGTTACCCGGCGCCAGATAACAAACAGCTGAGGAA
5370 5380 5390 5400 5410 5420
500 510 520 530 540 550
mRNA GCAGCTCTGTCCGTATGCCGCCGTCGGTGAGTGCCGCTACGGAATCAACTGTGCCTATCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene GCAGCTCTGTCCGTATGCCGCCGTCGGTGAGTGCCGCTACGGAATCAACTGTGCCTATCT
5430 5440 5450 5460 5470 5480
560 570 580 590 600 610
mRNA CCACGGCGACGTGTGTTATATGTGCGGGCTTCAGGTTCTCCACCCCACTGACAACAACCA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CCACGGCGACGTGTGTTATATGTGCGGGCTTCAGGTTCTCCACCCCACTGACAACAACCA
5490 5500 5510 5520 5530 5540
620 630
mRNA GCGCTCTGAGCACACTAAGG
:::::::::::::::::::X
gene GCGCTCTGAGCACACTAAGG
5550 5560
----------
95.041% identity in 242 nt overlap; init: 1095, opt: 1102
640 650 660 670 680 690
mRNA AGGCGTGCATCGAGGCCCACGAGAAAGACATGGAGATTTCATTCGCCATCCAACGCAGCA
X:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene AGGCGTGCATCGAGGCCCACGAGAAAGACATGGAGATTTCATTCGCCATCCAACGCAGCA
6920 6930 6940 6950 6960 6970
700 710 720 730 740 750
mRNA AGGACATGATGTGCGGCGTGTGTATGGAGGTGGTGTTTGAGAAGGCCAACCCAAGTGAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene AGGACATGATGTGCGGCGTGTGTATGGAGGTGGTGTTTGAGAAGGCCAACCCAAGTGAGC
6980 6990 7000 7010 7020 7030
760 770 780 790 800 810
mRNA GCCGCTTCGGCATCCTCTCCAACTGCAGTCACTGCTACTGTCTAAAGTGCATTCGCAAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene GCCGCTTCGGCATCCTCTCCAACTGCAGTCACTGCTACTGTCTAAAGTGCATTCGCAAGT
7040 7050 7060 7070 7080 7090
820 830 840 850 860 870
mRNA GGAGGAGCGCCAAGCAGTTTGAGAGCAAAATCATCAAGTCTTGCCCCGAGTGTCGAATCA
::::::::::::::::::::::::::::::::::::::X : : ::: : ::: :
gene GGAGGAGCGCCAAGCAGTTTGAGAGCAAAATCATCAAGTGAGTCACATTGTGACAAATTA
7100 7110 7120 7130 7140 7150
mRNA CG
:
gene GG
----------
96.585% identity in 205 nt overlap; init: 925, opt: 950
220 230 240 250 260 270
mRNA GGGACCGTTGCAGGTTTGAACACTGTAAACCAGCAAAAAACGAGGAGCTGCCAGCCCCCC
: ::: :: X:::::::::::::::::::::::::::::::::::::::::::::::::
gene GTGACTCTT-CAGGTTTGAACACTGTAAACCAGCAAAAAACGAGGAGCTGCCAGCCCCCC
3780 3790 3800 3810 3820 3830
280 290 300 310 320 330
mRNA AGATGCTGCCGCTGCCCTCCGCCTCGCTGGCCGGCCCATCTGACCCAGAACCCAGCGGGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene AGATGCTGCCGCTGCCCTCCGCCTCGCTGGCCGGCCCATCTGACCCAGAACCCAGCGGGC
3840 3850 3860 3870 3880 3890
340 350 360 370 380 390
mRNA CAACACCTGTCCCTGGGGCGCAAGACTGGGTCAACGCTGCTGAGTTTGTTCCAGGACAGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CAACACCTGTCCCTGGGGCGCAAGACTGGGTCAACGCTGCTGAGTTTGTTCCAGGACAGC
3900 3910 3920 3930 3940 3950
400 410 420
mRNA CATACTGTGGACGCGCTGAGCAAGC
::::::::::::::X ::::: : :
gene CATACTGTGGACGCGGTGAGCGACC
3960 3970
----------
100.000% identity in 146 nt overlap; init: 730, opt: 730
970 980 990 1000 1010 1020
mRNA GGAGTAAACCGTGTCGATACTTTGACGAGGGTCGTGGAACGTGCCCTTTTGGCTCGAATT
X:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene GGAGTAAACCGTGTCGATACTTTGACGAGGGTCGTGGAACGTGCCCTTTTGGCTCGAATT
8930 8940 8950 8960 8970 8980
1030 1040 1050 1060 1070 1080
mRNA GCTTCTACAAGCACGCCTTCCCCGACGGACGGCTGGAGGAAGCTCAGCCCCAGAGAAGAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene GCTTCTACAAGCACGCCTTCCCCGACGGACGGCTGGAGGAAGCTCAGCCCCAGAGAAGAC
8990 9000 9010 9020 9030 9040
1090 1100
mRNA AGACCGGATCCAACAGCAGAAACCGG
:::::::::::::::::::::::::X
gene AGACCGGATCCAACAGCAGAAACCGG
9050 9060 9070
----------
99.281% identity in 139 nt overlap; init: 685, opt: 686
100 110 120 130 140 150
mRNA TGCAGATATTTCATGCATGGACTTTGTAAAGAAGGAGACAACTGTCGATATTCCCACGAT
: X:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TTCAGATATTTCATGCATGGACTTTGTAAAGAAGGAGACAACTGTCGATATTCCCACGAT
950 960 970 980 990 1000
160 170 180 190 200 210
mRNA CTGACCAACAGCAAACCTGCGGCCATGATTTGCAAGTTCTTTCAGAAGGGAAACTGTGTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CTGACCAACAGCAAACCTGCGGCCATGATTTGCAAGTTCTTTCAGAAGGGAAACTGTGTG
1010 1020 1030 1040 1050 1060
220 230
mRNA TTTGGGGACCGTTGCAGGT
::::::::::::::::::X
gene TTTGGGGACCGTTGCAGGT
1070 1080
----------
90.909% identity in 143 nt overlap; init: 560, opt: 586
850 860 870 880 890 900
mRNA TCATCAAGTCTTGCCCCGAGTGTCGAATCACGTCCAACTTCGTCATCCCGAGCGAGTACT
:: :: X::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TCTGCAGGTCTTGCCCCGAGTGTCGAATCACGTCCAACTTCGTCATCCCGAGCGAGTACT
8380 8390 8400 8410 8420 8430
910 920 930 940 950 960
mRNA GGGTGGAAGACAAGGATGACAAGCAGAAACTCATCCAGAAATACAAGGACGGCATGGGG-
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::X
gene GGGTGGAAGACAAGGATGACAAGCAGAAACTCATCCAGAAATACAAGGACGGCATGGGGT
8440 8450 8460 8470 8480 8490
970 980
mRNA -AGTAAACCGTGTCGATACTTTG
: ::: : :: ::::: ::
gene ACACACACCATTTCTATACTATG
8500 8510 8520
----------
89.844% identity in 128 nt overlap; init: 500, opt: 511
10 20 30 40 50 60
mRNA GCTGTAGCCTCTCAACATAAACAGCTATGGCGGAGGCAGCAGCAGCGTCTACGGCGGCTT
X:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene GCTGTAGCCTCTCAACATAAACAGCTATGGCGGAGGCAGCAGCAGCGTCTACGGCGGCTT
200 210 220 230 240 250
70 80 90 100 110
mRNA CAGGAGTAATAGGAGGTTGGACCAAACACGTAACCTGCAGAT-ATTTCATGCATGGACTT
:::::::::::::::::::::::::::::::::::::::X : : : : :: :: ::
gene CAGGAGTAATAGGAGGTTGGACCAAACACGTAACCTGCAGGTAAGATAAGACAAGGGATT
260 270 280 290 300 310
120
mRNA TGTAAAGA
:::: :
gene ATTAAAAA
320
----------
69.231% identity in 65 nt overlap; init: 87, opt: 109
1590 1600 1610 1620 1630 1640
mRNA GATCACAGTCACAAACAGAATTATCAGCACATCTGCAGCTTTTTATTG--TCCGAGGTTT
X::::::::: :: ::::::^v: : :: : ::: : :: ::::: : : ::::
gene GATCACAGTCTCACACAGAA-TACCTTCATACCTGTCAC-TTATATTGTTTTCAGTGTTT
5630 5640 5650 5660 5670 5680
1650
mRNA TTGTT
: :::
gene TCGTT
5690
----------
69.048% identity in 42 nt overlap; init: 86, opt: 93
1740 1750 1760 1770
mRNA TCAACACAGTGAATTGTTTAACAGCTAGGTGAAATAAAATAA
: X:::::::: :: :: :: :: : :::::::X ::
gene TGAACACAGTGTATGGTCTATCACATTTTCAAAATAAAAGAA
7930 7940 7950 7960
----------
64.062% identity in 192 nt overlap; init: 84, opt: 247
2010 2020 2030 2040 2050 2060
mRNA TTAAACAAATTTAAAAAAAAATAATAATAATAATAAAACTCCACAACTCCTGCTCTTCCT
: :: :: :: ::::::: :::::::::::::: : : : :: :: :: :: :
gene ATTAAACAAATTTAAAAAAA--AATAATAATAATAATAAAACTCCACAACTCCTGCTCTT
12180 12190 12200 12210 12220 12230
2070 2080 2090 2100 2110 2120
mRNA GACCATGTGCAAACTTGCACTTTTTCATGTACATATCGTGTGTATCGTGTATATTGTATT
: :: :: :::: : : : ::: :: X::::::: ::: :: :
gene ---CCTGACCATGTGCAAACTTGCACTTTTTCAT---GTACATATCGTGTGTATCGTGTA
12240 12250 12260 12270 12280
2130 2140 2150 2160 2170 2180
mRNA TATTAGTGTATATTTGGTATATTTTTGTTGTATATTTCCATAGATGTTTTATTCTATAGA
:::: :: : :: :: :: ::: ^:v: :::::::: : : ::: : ::: :::::
gene TATT-GTATTTA-TTAGTGTATATTTG--GTATATTT---TTGTTGTATATTTCCATAGA
12290 12300 12310 12320 12330
2190
mRNA TGTTTATTTTCT
::::: : ::::
gene TGTTT-TATTCT
12340 12350
----------
58.734% identity in 395 nt overlap; init: 84, opt: 280
1820 1830 1840 1850 1860
mRNA ATCATTTTATCAT-CATAT-ATATCATTTCCTCT---CAACTC-AGCAGCTCAAGCTTTC
:: : : ::::: :::: :: :: : :: :: :: ::: ::: :: : ::
gene ATTTTATCATCATATATATCATTTCCTCTCAACTCAGCAGCTCAAGCTTTCAAAAGTGTC
11990 12000 12010 12020 12030 12040
1870 1880 1890 1900 1910 1920
mRNA AAAAGTGTCAAAACATCAACAGCTGGGAGGAAATCTTAAAATTGTAATT-TACACACACA
::: : : :: :: : : :: : :: : ::: : : :: :::::::::
gene AAA------ACATCAACAGCTG--GGAGGAAATCTTAAAATTGTAATTTACACACACACA
12050 12060 12070 12080 12090
1930 1940 1950 1960 1970 1980
mRNA CACACACACACACCTG--AGCCAAACAGAAAGTGGCTGTGA-GTTATGGTGGGGTCAACT
::::::::::: : : :: : :: :: :: : : : ::: :::
gene CACACACACACCTGAGCCAAACAGAAAGTGGCTGTGAGTTATGGTGGGGTCAACTCA---
12100 12110 12120 12130 12140 12150
1990 2000 2010 2020 2030 2040
mRNA CACGAGGTCTGTGATATTCTTGTATTAAACAAATTTAAAAAAA--AATAATAATAATAAT
: : : :: :: : : : : :: :: :: ::::::: ::::::::::::::
gene CGAGGTCTGTGATATTCTTGTAT-TAAACAAATTTAAAAAAAAATAATAATAATAATAAA
12160 12170 12180 12190 12200 12210
2050 2060 2070 2080 2090
mRNA AAAACTCCACAACTCCTGCTCTT---CCTGACCATGTGCAAACTTGCACTTTTTCAT---
: : : :: :: :: :: : : :: :: :::: : : : :::
gene ACTCCACAACTCCTGCTCTTCCTGACCATGTGCAAACTTGCACTTTTTCATGTACATATC
12220 12230 12240 12250 12260 12270
2100 2110 2120 2130 2140 2150
mRNA GTACATATCGTGTGTATCGTGTATATT-GTATTTA-TTAGTGTATATTTG--GTATATTT
:: X::::::: ::: :: : :::: :: : :: :: :: ::: v:^: ::::::::
gene GTGTGTATCGTGTATATTGTATTTATTAGTGTATATTTGGTATATTTTTGTTGTATATTT
12280 12290 12300 12310 12320 12330
2160 2170 2180
mRNA ---TTGTTGTATATTTCCATAGATGTTT-TATTCT
: : ::: : ::: :::::::::: : ::::
gene CCATAGATGTTTTATTCTATAGATGTTTATTTTCT
12340 12350 12360
----------
99.863% identity in 1459 nt overlap; init: 70, opt: 7276
1110 1120 1130 1140 1150 1160
mRNA C-CGGAACTCGAGGCGAACGCCGCTGTGGGACATCTACGACGAGAGGGAAAGCACCGACT
: : ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CTCAGAACTCGAGGCGAACGCCGCTGTGGGACATCTACGACGAGAGGGAAAGCACCGACT
11280 11290 11300 11310 11320 11330
1170 1180 1190 1200 1210 1220
mRNA CCTTCGACAACGAGGATGAGGAGATGGTGACGTTTGAGCTGAGCGAGATGCTCCTCATGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CCTTCGACAACGAGGATGAGGAGATGGTGACGTTTGAGCTGAGCGAGATGCTCCTCATGC
11340 11350 11360 11370 11380 11390
1230 1240 1250 1260 1270 1280
mRNA TGCTCGCCGCAGGAACCGACGACGAGGAGGTTATAATACGCCCCCCGAGCTGCGCTACTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TGCTCGCCGCAGGAACCGACGACGAGGAGGTTATAATACGCCCCCCGAGCTGCGCTACTT
11400 11410 11420 11430 11440 11450
1290 1300 1310 1320 1330 1340
mRNA CTTCAGGCAGACTGGACCCTACAGTGACTCGGTATCGGAAGGCTTGCTAACCTCAGATGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CTTCAGGCAGACTGGACCCTACAGTGACTCGGTATCGGAAGGCTTGCTAACCTCAGATGA
11460 11470 11480 11490 11500 11510
1350 1360 1370 1380 1390 1400
mRNA TGACAAAGTGACAGAAATAGAAGCAAAACAAGAGGTTTGCTTTTCCCCTGATGGAAGACA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TGACAAAGTGACAGAAATAGAAGCAAAACAAGAGGTTTGCTTTTCCCCTGATGGAAGACA
11520 11530 11540 11550 11560 11570
1410 1420 1430 1440 1450 1460
mRNA GCTGTTGGTGAGTAAAGGAATACAGTTTGATGCTGAACTCGCAACGTTTCTTCCGGACTG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene GCTGTTGGTGAGTAAAGGAATACAGTTTGATGCTGAACTCGCAACGTTTCTTCCGGACTG
11580 11590 11600 11610 11620 11630
1470 1480 1490 1500 1510 1520
mRNA GTAAGCGAACAGCTGTTAATGCTAACGCTAGCTATGTAGCAATGGTAAAACAGCTCCTTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene GTAAGCGAACAGCTGTTAATGCTAACGCTAGCTATGTAGCAATGGTAAAACAGCTCCTTT
11640 11650 11660 11670 11680 11690
1530 1540 1550 1560 1570 1580
mRNA AAAATTCTTAGTCAGTCTGAATGTTTCTGTTTGAGGGTCAAAACACGGTAATGTGAAATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene AAAATTCTTAGTCAGTCTGAATGTTTCTGTTTGAGGGTCAAAACACGGTAATGTGAAATG
11700 11710 11720 11730 11740 11750
1590 1600 1610 1620 1630 1640
mRNA TTTTGATCACAGTCACAAACAGAATTATCAGCACATCTGCAGCTTTTTATTGTCCGAGGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TTTTGATCACAGTCACAAACAGAATTATCAGCACATCTGCAGCTTTTTATTGTCCGAGGT
11760 11770 11780 11790 11800 11810
1650 1660 1670 1680 1690 1700
mRNA TTTTGTTTTGGTTTGATCAGGCCCACAAACTCCACTGTTAACAGCCGTGTTTTCAGTGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TTTTGTTTTGGTTTGATCAGGCCCACAAACTCCACTGTTAACAGCCGTGTTTTCAGTGAA
11820 11830 11840 11850 11860 11870
1710 1720 1730 1740 1750 1760
mRNA ACACTTGCCCTGCACCAAACAGCCAGTCAACACAGTGAATTGTTTAACAGCTAGGTGAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene ACACTTGCCCTGCACCAAACAGCCAGTCAACACAGTGAATTGTTTAACAGCTAGGTGAAA
11880 11890 11900 11910 11920 11930
1770 1780 1790 1800 1810 1820
mRNA TAAAATAATTGCACGCTGCTTTAAAACTACATTGCATTAGCTCTCCCAGATCATTTTATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TAAAATAATTGCACGCTGCTTTAAAACTACATTGCATTAGCTCTCCCAGATCATTTTATC
11940 11950 11960 11970 11980 11990
1830 1840 1850 1860 1870 1880
mRNA ATCATATATATCATTTCCTCTCAACTCAGCAGCTCAAGCTTTCAAAAGTGTCAAAACATC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene ATCATATATATCATTTCCTCTCAACTCAGCAGCTCAAGCTTTCAAAAGTGTCAAAACATC
12000 12010 12020 12030 12040 12050
1890 1900 1910 1920 1930 1940
mRNA AACAGCTGGGAGGAAATCTTAAAATTGTAATTTACACACACACACACACACACACCTGAG
:::::::::::::::::::::::::::::::::v:::::::^::::v:::::::^:::::
gene AACAGCTGGGAGGAAATCTTAAAATTGTAATTTACACACACACACACACACACACCTGAG
12060 12070 12080 12090 12100 12110
1950 1960 1970 1980 1990 2000
mRNA CCAAACAGAAAGTGGCTGTGAGTTATGGTGGGGTCAACTCACGAGGTCTGTGATATTCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CCAAACAGAAAGTGGCTGTGAGTTATGGTGGGGTCAACTCACGAGGTCTGTGATATTCTT
12120 12130 12140 12150 12160 12170
2010 2020 2030 2040 2050 2060
mRNA GTATTAAACAAATTTAAAAAAAAATAATAATAATAATAAAACTCCACAACTCCTGCTCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene GTATTAAACAAATTTAAAAAAAAATAATAATAATAATAAAACTCCACAACTCCTGCTCTT
12180 12190 12200 12210 12220 12230
2070 2080 2090 2100 2110 2120
mRNA CCTGACCATGTGCAAACTTGCACTTTTTCATGTACATATCGTGTGTATCGTGTATATTGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CCTGACCATGTGCAAACTTGCACTTTTTCATGTACATATCGTGTGTATCGTGTATATTGT
12240 12250 12260 12270 12280 12290
2130 2140 2150 2160 2170 2180
mRNA ATTTATTAGTGTATATTTGGTATATTTTTGTTGTATATTTCCATAGATGTTTTATTCTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene ATTTATTAGTGTATATTTGGTATATTTTTGTTGTATATTTCCATAGATGTTTTATTCTAT
12300 12310 12320 12330 12340 12350
2190 2200 2210 2220 2230 2240
mRNA AGATGTTTATTTTCTGCTGTGGTAAATGAATTTCCCAGTTGTGGGATAAATAAAGTTAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene AGATGTTTATTTTCTGCTGTGGTAAATGAATTTCCCAGTTGTGGGATAAATAAAGTTAAT
12360 12370 12380 12390 12400 12410
2250 2260 2270 2280 2290 2300
mRNA CCTAATCTAATCTAATCTAAATGTGGATTCTGAAAAAAAAAAAGGCTAGAGTAACAACAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CCTAATCTAATCTAATCTAAATGTGGATTCTGAAAAAAAAAAAGGCTAGAGTAACAACAG
12420 12430 12440 12450 12460 12470
2310 2320 2330 2340 2350 2360
mRNA AAGGCTTCTACACTTTATTCGTTGTGTTATAACAACTTTAAATGTGTTGAATCCTTGAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene AAGGCTTCTACACTTTATTCGTTGTGTTATAACAACTTTAAATGTGTTGAATCCTTGAAG
12480 12490 12500 12510 12520 12530
2370 2380 2390 2400 2410 2420
mRNA GAAAGAATTCATCAGGAAGGTTTTAAGCTCACCTACTCTTTGCCAATGTTGTTATTGCTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene GAAAGAATTCATCAGGAAGGTTTTAAGCTCACCTACTCTTTGCCAATGTTGTTATTGCTT
12540 12550 12560 12570 12580 12590
2430 2440 2450 2460 2470 2480
mRNA CATATGGGGATGTAGTTTCACCATCTGTCAAACAAGGTCCTACAGCTTCTTGCCCTTTCT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene CATATGGGGATGTAGTTTCACCATCTGTCAAACAAGGTCCTACAGCTTCTTGCCCTTTCT
12600 12610 12620 12630 12640 12650
2490 2500 2510 2520 2530 2540
mRNA TTCTAATGCTCATCAGATAACATATTTAGATATAACCAAATTAAAAAGATTCATCAGTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gene TTCTAATGCTCATCAGATAACATATTTAGATATAACCAAATTAAAAAGATTCATCAGTAA
12660 12670 12680 12690 12700 12710
2550 2560
mRNA TGATTATGGACTAAATTCT
:::::::::::::::::::
gene TGATTATGGACTAAATTCT
12720 12730
----------
80.952% identity in 21 nt overlap; init: 69, opt: 69
1650 1660
mRNA TTTTGTTTTGGTTTGATCAGG
X::::: :: ::: :::::X
gene TTTTGTGTTAGTTCTATCAGG
6420 6430
----------
84.211% identity in 19 nt overlap; init: 68, opt: 68
1790 1800
mRNA TAAAACTACATTGCATTAG
X:::::: ::: :::::X
gene TAAAACTTTATTTCATTAG
8250 8260
----------
75.000% identity in 24 nt overlap; init: 66, opt: 66
110 120
mRNA ATATTTCATGCATGGACTTTGTAA
X::::::: : : :: :::::X
gene ATATTTCAAGAAAAGAAGTTGTAA
4360 4370
----------