NPS@ : CLUSTALW ALIGNMENT

NPS@ is the IBCP contribution to PBIL in Lyon, France

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Monday, February 17th 2003 : NPS@ release 3.0 is now available
HMMER (hmmbuild and hmmsearch) is now available (see news)

Job CLUSTALW (ID: 25408) is running on NPS@ server (started on Mon Nov 3 12:06:53 CET 2003).
Results will be shown below. Please wait and don't go back.

In your publication cite :
NPS@: Network Protein Sequence Analysis
TIBS 2000 March Vol. 25, No 3 [291]:147-150
Combet C., Blanchet C., Geourjon C. and Deléage G.

CLUSTALW multiple alignment

Abstract Thompson, J.D., Higgins, D.G. and Gibson, T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. (1994) Nucleic Acids Research, 22, 4673-4680 [HELP]

alignment with width :
residues.
Conservation level of % (works with "using conservation level of" option in list above).

with percentage of secondary structure.

DSC (King and Sternberg, 1996) (Do it alone) [HELP]
DPM (Deleage and Roux, 1987) [HELP]
GOR I (Garnier et al.,1978) Choose parameters [HELP]
GOR III (Gibrat et al.,1987) [HELP]
GOR IV (Garnier et al., 1996) [HELP]
HNN (Guermeur, 1997) [HELP]
SIMPA96 (Levin et al., 1996) [HELP]
PHD (Rost et al., 1994) (Do it alone) [HELP]
PREDATOR (Argos et al., 1996) Choose parameters [HELP]
SOPM (Geourjon and Deleage, 1994) (Do it alone) [Choose parameters] [HELP]
A prediction method with the Do it alone sentence must be the only newly selected one between two clicks on SHOW button. The other methods can be kept if they have been computed or can be added after. All methods can be displayed at the same time in the alignement.

View CLUSTALW in: [MPSA (Mac, UNIX) , About...] [AnTheProt (PC) , Download...] [HELP]


                     10        20        30        40        50        60
                      |         |         |         |         |         |
YRF1_YEAST   ------------------------------------------------------------
YRF2_YEAST   ------------------------------------------------------------
YRF3_YEAST   MEIENEQICTCIAQILHLLNSLIITFLDDDKTETGQSFVYIDGFLVKKHNNQHTIVNFET
YRF4_YEAST   ------------------------------------------------------------
YRF6_YEAST   MEIENEQICTCIAQILHLLNSLIITFLDDDKTETGQSFVYIDGFLVKKHNNQHTIVNFET
SUV3_YEAST   ------------------------------------------------------------
                                                                         
Prim.cons.   MEIENEQICTCIAQILHLLNSLIITFLDDDKTETGQSFVYIDGFLVKKHNNQHTIVNFET

                     70        80        90       100       110       120
                      |         |         |         |         |         |
YRF1_YEAST   ----MKVSDRRKFEKANFDEFESALNNKNDLVHCPSITLFESIPTEVRSFYEDEKSGLIK
YRF2_YEAST   ------------------------------------------------------------
YRF3_YEAST   YKNKMKVSDRRKFEKANFDEFESALNNKNDLVHCPSITLFESIPTEVRSFYEDEKSGLIK
YRF4_YEAST   ------------------------------------------------------------
YRF6_YEAST   YKNKMKVSDRRKFEKANFDEFESALNNKNDLVHCPSITLFESIPTEVRSFYEDEKSGLIK
SUV3_YEAST   ------------------------------------------------------------
                                                                         
Prim.cons.   YKNKMKVSDRRKFEKANFDEFESALNNKNDLVHCPSITLFESIPTEVRSFYEDEKSGLIK

                    130       140       150       160       170       180
                      |         |         |         |         |         |
YRF1_YEAST   VVKFRTGAMDRKRSFEKIVISVMVGKNVQKFLTFVEDEPDFQGGPIPSKYLIPKKINLMV
YRF2_YEAST   ----------------------------------------------------------MV
YRF3_YEAST   VVKFRTGAMDRKRSFEKIVVSVMVGKNVQKFLTFVEDEPDFQGGPIPSKYLIPKKINLMV
YRF4_YEAST   ------------------------------------------------------------
YRF6_YEAST   VVKFRTGAMDRKRSFEKIVVSVMVGKNVQKFLTFVEDEPDFQGGPIPSKYLIPKKINLMV
SUV3_YEAST   ------------------------------------------------------------
                                                                         
Prim.cons.   VVKFRTGAMDRKRSFEKIVVSVMVGKNVQKFLTFVEDEPDFQGGPIPSKYLIPKKINLMV

                    190       200       210       220       230       240
                      |         |         |         |         |         |
YRF1_YEAST   YTLFQVHTLKFNRKDYDTLSLFYLNRGYYNELSFRVLERCHEIASARPNDSSTMRTFTDF
YRF2_YEAST   YTLFQVHTLKFNRKDYDTLSLFYLNRGYYNELSFRVLERCHEKASARPNDSSTMRTFTDF
YRF3_YEAST   YTLFQVHTLKFNRKDYDTLSLFYLNRGYYNELSFRVLERCYEIASARPNDSSTMRTFTDF
YRF4_YEAST   ------------------------------------------------------------
YRF6_YEAST   YTLFQVHTLKFNRKDYDTLSLFYLNRGYYNELSFRVLERCYEIASARPNDSSTMRTFTDF
SUV3_YEAST   ------------------------------------------------------------
                                                                         
Prim.cons.   YTLFQVHTLKFNRKDYDTLSLFYLNRGYYNELSFRVLERC2EIASARPNDSSTMRTFTDF

                    250       260       270       280       290       300
                      |         |         |         |         |         |
YRF1_YEAST   VSGAPIVRSLQKSTIRKYGYNLAPYMFLLLHVDELSIFSAYQASLPGEKKVDTERLKRDL
YRF2_YEAST   VSGAPIVRSLQKSTIRKYGYNLAPYMFLLLHVDELSIFSAYQASLPGEKKVDTERLKRDL
YRF3_YEAST   VSGTPIVRGLQKSTIRKYGYNLAPYMFLLLHVDELSIFSAYQASLPGEKKVDTERLKRDL
YRF4_YEAST   ------------------------------------------------------------
YRF6_YEAST   VSGTPIVRGLQKSTIRKYGYNLAPYMFLLLHVDELSIFSAYQASLPGEKKVDTERLKRDL
SUV3_YEAST   ------------------------------------------------------------
                                                                         
Prim.cons.   VSG2PIVR2LQKSTIRKYGYNLAPYMFLLLHVDELSIFSAYQASLPGEKKVDTERLKRDL

                    310       320       330       340       350       360
                      |         |         |         |         |         |
YRF1_YEAST   CPRKPIEIKYFSQICNDMMNKKDRLGDILHIILRACALNFGAGPRGGAGDEEDRSITNEE
YRF2_YEAST   CPRKPTEIKYFSQICNDMMNKKDRLGDILHIILRACALNFGAGPRGGAGDEEDRSITNEE
YRF3_YEAST   CPRKPTEIKYFSQICNDMMNKKDRLGDILHIILRACALNFGAGPRGGAGDEEDRSITNEE
YRF4_YEAST   ------------------------------------------------------------
YRF6_YEAST   CPRKPTEIKYFSQICNDMMNKKDRLGDILHIILRACALNFGAGPRGGAGDEEDRSITNEE
SUV3_YEAST   ------------------------------------------------------------
                                                                         
Prim.cons.   CPRKPTEIKYFSQICNDMMNKKDRLGDILHIILRACALNFGAGPRGGAGDEEDRSITNEE

                    370       380       390       400       410       420
                      |         |         |         |         |         |
YRF1_YEAST   PIIPSVDEHGLKVCKLRSPNTPRRLRKTLDAVKALLVSSCACTARDLDIFDDTNGVAMWK
YRF2_YEAST   PIIPSVDEHGLKVCKLRSPNTPRRLRKTLDAVKALLVSSCACTARDLDIFDDNNGVAMWK
YRF3_YEAST   PIIPSVDEHGLKVCKLRSPNTPRRLRKTLDAVKALLVSSCACTARDLDIFDDNNGVAMWK
YRF4_YEAST   ------------------------MWKTLGRVEQLLP-----------------------
YRF6_YEAST   PIIPSVDEHGLKVCKLRSPNTPRRLRKTLDAVKALLVSSCACTARDLDIFDDNNGVAMWK
SUV3_YEAST   ------------------------------------------------------------
                                                                         
Prim.cons.   PIIPSVDEHGLKVCKLRSPNTPRRLRKTLDAVKALLVSSCACTARDLDIFDDNNGVAMWK

                    430       440       450       460       470       480
                      |         |         |         |         |         |
YRF1_YEAST   WIKILYHEVAQETTLKDSYRITLVPSSDGISVCGKLFNREYVRGFYFACKAQFDNLWGEL
YRF2_YEAST   WIKILYHEVAQETALKDSYRITLVPSSDGVSVCGKLFNREYVRGFYFACKAQFDNLWEEL
YRF3_YEAST   WIKILYHEVAQETALKDSYRITLVPSSDGVSVCGKLFNREYVRGFYFACKAQFDNLWEEL
YRF4_YEAST   ----------------------------------------------------Y-------
YRF6_YEAST   WIKILYHEVAQETALKDSYRITLVPSSDGVSVCGKLFNREYVRGFYFACKAQFDNLWEEL
SUV3_YEAST   ------------------------------------------------------------
                                                                         
Prim.cons.   WIKILYHEVAQETALKDSYRITLVPSSDGVSVCGKLFNREYVRGFYFACKAQFDNLWEEL

                    490       500       510       520       530       540
                      |         |         |         |         |         |
YRF1_YEAST   NNCFYMPTVVDIASLILRNREVLFREPKRGIDEYLENDSFLQMIPVKYREIVLPKLRRDT
YRF2_YEAST   NDCFYMPTVVDIASLILRNREVLFREPKRGIDEYLENDSFLQMIPVKYREIVLPKLRRDT
YRF3_YEAST   NDCFYMPTVVDIASLILRNREVLFREPKRGIDEYLENDSFLQMIPVKYREIVLPKLRRDT
YRF4_YEAST   ------------ASLILRNREVLFREPKRGIDEYLENDSFFQMIPVKYREIVLPKLRRDT
YRF6_YEAST   NDCFYMPTVVDIASLILRNREVLFREPKRGIDEYLENDSFLQMIPVKYREIVLPKLRRDT
SUV3_YEAST   ------------------------------------------MALVKYSTVFFP------
                                                       *  ***  :.:*      
Prim.cons.   NDCFYMPTVVDIASLILRNREVLFREPKRGIDEYLENDSFLQMIPVKYREIVLPKLRRDT

                    550       560       570       580       590       600
                      |         |         |         |         |         |
YRF1_YEAST   NKMTAALKNKVTVAIDELTVPLMWMVHFAVGYPYRYPELQLLAFAGPQRNVYVDDTTRRI
YRF2_YEAST   NKMTAALKNKVTVAIDELTVPLMWMIHFAVGYPYRYPELQLLAFAGPQRNVYVDDTTRRI
YRF3_YEAST   NKMTAALKNKVTVAIDELTVPLMWMIHFAVGYPYRYPELQLLAFAGPQRNVYVDDTTRRI
YRF4_YEAST   NKMTAALKNKVAVAIDELTVPLMWMIHFAVGYPYRYPELQLLAFAGPQRNVYVDDTTRRI
YRF6_YEAST   NKMTAALKNKVTVAIDELTVPLMWMIHFAVGYPYRYPELQLLAFAGPQRNVYVDDTTRRI
SUV3_YEAST   ----------------------------------------LRSLR---------------
                                                     * ::                
Prim.cons.   NKMTAALKNKVTVAIDELTVPLMWMIHFAVGYPYRYPELQLLAFAGPQRNVYVDDTTRRI

                    610       620       630       640       650       660
                      |         |         |         |         |         |
YRF1_YEAST   QLYTDYNKNGSSEPRLKTLDGLTSDYVFYFVTVLRQMQICALGNSYDAFNHDPWMDVVGF
YRF2_YEAST   QLYTDYNKNGSSEPRLKTLDGLTSDYVFYFVTVLRQMQICALGNSYDAFNHDPWMDVVGF
YRF3_YEAST   QLYTDYNKNGSSEPRLKTLDGLTSDYVFYFVTVLRQMQICALGNSYDAFNHDPWMDVVGF
YRF4_YEAST   QLYTDYNKNGSSEPRLKTLDGLTSDYVFYFVTVLRQMQICALGNSYDAFNHDPWMDVVGF
YRF6_YEAST   QLYTDYNKNGSSEPRLKTLDGLTSDYVFYFVTVLRQMQICALGNSYDAFNHDPWMDVVGF
SUV3_YEAST   -----------------------------LFVSIKK-----------AYYHSEPHSIDLF
                                          :.. :::           *: *.   .:  *
Prim.cons.   QLYTDYNKNGSSEPRLKTLDGLTSDYVFYFVTVLRQMQICALGNSYDAFNHDPWMDVVGF

                    670       680       690       700       710       720
                      |         |         |         |         |         |
YRF1_YEAST   EDPDQVTNRDISRIVLYSYMFLNTAKGCLVEYATFRQYMRELPKNAPQKLNFREMRQGLI
YRF2_YEAST   EDPDQVTNRDISRIVLYSYMFLNTAKGCLVEYATFRQYMRELPKNAPQKLNFREMRQGLI
YRF3_YEAST   EDPDQVTNRDISRIVLYSYMFLNTAKGCLVEYATFRQYMRELPKNAPQKLNFREMRQGLI
YRF4_YEAST   EDPDQVTNRDISRIVLYSYMFLNTAKGCLVEYATFRQYMRELPKNAPQKLNFREMRQGLI
YRF6_YEAST   EDPDQVTNRDISRIVLYSYMFLNTAKGCLVEYATFRQYMRELPKNAPQKLNFREMRQGLI
SUV3_YEAST   HDKDWIVKRPK---------FLN------------------LPKNEHSKL---DI-----
             .* * :.:*           ***                  ****  .**   ::     
Prim.cons.   EDPDQVTNRDISRIVLYSYMFLNTAKGCLVEYATFRQYMRELPKNAPQKLNFREMRQGLI

                    730       740       750       760       770       780
                      |         |         |         |         |         |
YRF1_YEAST   ALGRHCVGSRFETDLYESATSELMANHSVQTGRNIYGVDSFSLTSVSGTTATLLQERASE
YRF2_YEAST   ALGRHCVGSRFETDLYESATSELMANHSVQTGRNIYGVDSFSLTSVSGTTATLLQERASE
YRF3_YEAST   ALGRHCVGSRFETDLYESATSELMANHSVQTGRNIYGVDSFSLTSVSGTTATLLQERASE
YRF4_YEAST   ALGRHCVGSRFETDLYESATSELMANHSVQTGRNIYGVDSFSLTSVSGTTATLLQERASE
YRF6_YEAST   ALGRHCVGSRFETDLYESATSELMANHSVQTGRNIYGVDSFSLTSVSGTTATLLQERASE
SUV3_YEAST   ------FQFNFN----KSESNNVYLQDSSFKDN----LDKAMQFIYNDKLSSLDAKQVPI
                   .  .*:    :* :.::  :.*  ...    :*.      ... ::*  ::.. 
Prim.cons.   ALGRHCVGSRFETDLYESATSELMANHSVQTGRNIYGVDSFSLTSVSGTTATLLQERASE

                    790       800       810       820       830       840
                      |         |         |         |         |         |
YRF1_YEAST   RWIQWLGLESDYHCSFSSTRNAEDVVAGEAASSDHDQKISRVTRKRPREPKSTNDILVAG
YRF2_YEAST   RWIQWLGLESDYHCSFSSTRNAEDVVAGEAASSDHHQKISRVTRKRPREPKSTNDILVAG
YRF3_YEAST   RWIQWLGLESDYHCSFSSTRNAEDVVAGEAASSDHHQKISRVTRKRPREPKSTNDILVAG
YRF4_YEAST   RWIQWLGLESDYHCSFSSTRNAEDVVAGEAASSDHHQKISRVTRKRPREPKSTNDILVAG
YRF6_YEAST   RWIQWLGLESDYHCSFSSTRNAEDVVAGEAASSDHHQKISRVTRKRPREPKSTNDILVAG
SUV3_YEAST   KNLAWLKLR---------------------------------------------------
             : : ** *.                                                   
Prim.cons.   RWIQWLGLESDYHCSFSSTRNAEDVVAGEAASSDHHQKISRVTRKRPREPKSTNDILVAG

                    850       860       870       880       890       900
                      |         |         |         |         |         |
YRF1_YEAST   QKLFGSSFEFRDLHQLRLCHEIYMADTPSVAVQAPPGYGKTELFHLPLIALASKGDVKYV
YRF2_YEAST   QKLFGSSFEFRDLHQLRLCHEIYMADTPSVAVQAPPGYGKTELFHLPLIALASKGDVKYV
YRF3_YEAST   QKLFGSSFEFRDLHQLRLCHEIYMADTPSVAVQAPPGYGKTELFHLPLIALASKGDVKYV
YRF4_YEAST   RKLFGSSFEFRDLHQLRLCHEIYMADTPSVAVQAPPGYGKTELFHLPLIALASKGDVKYV
YRF6_YEAST   QKLFGSSFEFRDLHQLRLCHEIYMADTPSVAVQAPPGYGKTELFHLPLIALASKGDVKYV
SUV3_YEAST   ------DYIYQQLKDPKLQAKTYVPSVSEIIHPSSPGN---------LISLLIN------
                   .: :::*:: :*  : *:.....:   :.**          **:*  :      
Prim.cons.   QKLFGSSFEFRDLHQLRLCHEIYMADTPSVAVQAPPGYGKTELFHLPLIALASKGDVKYV

                    910       920       930       940       950       960
                      |         |         |         |         |         |
YRF1_YEAST   SFLFVPYTVLLANCMIRLSRCGCLNVAPVRNFIEEGCDGVTDLYVGIYDDLASTNFTDRI
YRF2_YEAST   SFLFVPYTVLLANCMIRLSRCGCLNVAPVRNFIEEGCDGVTDLYVGIYDDLASTNFTDRI
YRF3_YEAST   SFLFVPYTVLLANCMIRLSRCGCLNVAPVRNFIEEGCDGVTDLYVGIYDDLASTNFTDRI
YRF4_YEAST   SFLFVPYTVLLANCMIRLSRCGCLNVAPVRNFIEEGCDGVTDLYVGIYDDLASTNFTDRI
YRF6_YEAST   SFLFVPYTVLLANCMIRLSRCGCLNVAPVRNFIEEGCDGVTDLYVGIYDDLASTNFTDRI
SUV3_YEAST   ------------------------------------CN----------------KISNL-
                                                 *:                ::::  
Prim.cons.   SFLFVPYTVLLANCMIRLSRCGCLNVAPVRNFIEEGCDGVTDLYVGIYDDLASTNFTDRI

                    970       980       990      1000      1010      1020
                      |         |         |         |         |         |
YRF1_YEAST   AAWENIVECTFRTNNVKLGYLIVDEFHNFETEVYRQSQFGGITNLDFDAFEKAIFLSGTA
YRF2_YEAST   AAWENIVECTFRTNNVKLGYLIVDEFHNFETEVYRQSQFGGITNLDFDAFEKAIFLSGTA
YRF3_YEAST   AAWENIVECTFRTNNVKLGYLIVDEFHNFETEVYRQSQFGGITNLDFDAFEKAIFLSGTA
YRF4_YEAST   AAWENIVECTFRTNNVKLGYLIVDEFHNFETEVYRQSQFGGITNLDFDAFEKAIFLSGTA
YRF6_YEAST   AAWENIVECTFRTNNVKLGYLIVDEFHNFETEVYRQSQFGGITNLDFDAFEKAIFLSGTA
SUV3_YEAST   -VWKSVLKYSLSNNITTLDKFIHVLQQTFD-HVYEQEILPMMTNTDDTDGAHNVDITNPA
              .*:.::: :: .* ..*. :*    :.*: .**.*. :  :** *     : : ::..*
Prim.cons.   AAWENIVECTFRTNNVKLGYLIVDEFHNFETEVYRQSQFGGITNLDFDAFEKAIFLSGTA

                   1030      1040      1050      1060      1070      1080
                      |         |         |         |         |         |
YRF1_YEAST   PEAVADAALQR--IGLTGLAKKSMDINELKRSEDLSRGLSSYPTRMFNLIKEKSEVPLGH
YRF2_YEAST   PEAVADAALQR--IGLTGLAKKSMDINELKRSEDLSRGLSSYPTRMFNLIKEKSEVPLGH
YRF3_YEAST   PEAVADAALQR--IGLTGLAKKSMDINELKRSEDLSRGLSSYPTRMFNLIKEKSEVPLGH
YRF4_YEAST   PEAVADAALQR--IGLTGLAKKSMDINELKRSEDLSRGLSSYPTRMFNLIKEKSEVPLGH
YRF6_YEAST   PEAVADAALQR--IGLTGLAKKSMDINELKRSEDLSRGLSSYPTRMFNLIKEKSEVPLGH
SUV3_YEAST   EWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLL------------A
                     ::*  *   * ::..   . *:: :.:.**  : * *::             
Prim.cons.   PEAVADAALQRHIIGLTGLAKKSMDINELKRSEDLSRGLSSYPTRMFNLIKEKSEVPLGH

                   1090      1100      1110      1120      1130      1140
                      |         |         |         |         |         |
YRF1_YEAST   VHKIWKKVESQPEEALKLLLALFEIEPESKAIVVASTTNEVEELACSWRKYFRVVWIHGK
YRF2_YEAST   VHKIWKKVESQPEEALKLLLALFEIEPESKAIVVASTTNEVEELACSWRKYFRVVWIHGK
YRF3_YEAST   VHKIWKKVESQPEEALKLLLALFEIEPESKAIVVASTTNEVEELACSWRKYFRVVWIHGK
YRF4_YEAST   VHKIWKKVESQPEEALKLLLALFEIEPESKAIVVASTTNEVEELACSWRKYFRVVWIHGK
YRF6_YEAST   VHKIWKKVESQPEEALKLLLALFEIEPESKAIVVASTTNEVEELACSWRKYFRVVWIHGK
SUV3_YEAST   R-EVYDRFHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQK--FDVVVLD--
               :::.:..::  ..  *    .  : :.:.  .. *:. ** :. . :  * ** :.  
Prim.cons.   VHKIWKKVESQPEEALKLLLALFEIEPESKAIVVASTTNEVEELACSWRKYFRVVWIHGK

                   1150      1160      1170      1180      1190      1200
                      |         |         |         |         |         |
YRF1_YEAST   LGAAEKVSRTKEFVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR
YRF2_YEAST   LGAAEKVSRTKEFVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR
YRF3_YEAST   LGAAEKVSRTKEFVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR
YRF4_YEAST   LGAAEKVSRTKEFVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR
YRF6_YEAST   LGAAEKVSRTKEFVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR
SUV3_YEAST   ---------EIQMMSDG------DRGWAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMT
                        ::::**      .   .  .  :  :   : * .. .:: *::.: :: 
Prim.cons.   LGAAEKVSRTKEFVTDGSMRVLIGTKLVTEGIDIKQLMMVIMLDNRLNIIELIQGVGRLR

                   1210      1220      1230      1240      1250      1260
                      |         |         |         |         |         |
YRF1_YEAST   DGGLCYLLSRKNSWAARNRKGELPPIKEGCITEQVREFYGLESKKGKKGQHVGCCGSRTD
YRF2_YEAST   DGGLCYLLSRKNSWAARNRKGELPPIKEGCITEQVREFYGLESKKGKKGQHVGCCGSRTD
YRF3_YEAST   DGGLCYLLSRKNSWAARNRKGELPPIKEGCITEQVREFYGLESKKGKKGQHVGCCGSRTD
YRF4_YEAST   DGGLCYLLSRKNSWAARNRKGELPPIKEGCITEQVREFYGLESKKGKKGQHVGCCGSRTD
YRF6_YEAST   DGGLCYLLSRKNSWAARNRKGELPPIKEGCITEQVREFYGLESKKGKKGQHVGCCGSRTD
SUV3_YEAST   G--------DKLTINEYERLGKLS------V--EEK--P---IKDGIKGLRKGDC-----
             .         * :    :* *:*.      :  : :       *.* ** : * *     
Prim.cons.   DGGLCYLLSRKNSWAARNRKGELPPIKEGCITEQVREFYGLESKKGKKGQHVGCCGSRTD

                   1270      1280      1290      1300      1310      1320
                      |         |         |         |         |         |
YRF1_YEAST   LSADTVELIERMDRLAEKQATASMSIIALPSSFQESNSSDRCRKYCSSDEDSDTCIHGSA
YRF2_YEAST   LSADTVELIERMDRLAEKQATASMSIVALPSSFQESNSSDRCRKYCSSDEDSDTCIHGSA
YRF3_YEAST   LSADTVELIERMDRLAEKQATASMSIVALPSSFQESNSSDRCRKYCSSDEDSDTCIHGSA
YRF4_YEAST   LSADTVELIERMDRLAEKQATASMSIIALPSSFQESNSSDRCRKYCSSDEDSDTCIHGSA
YRF6_YEAST   LSADTVELIERMDRLAEKQATASMSIVALPSSFQESNSSDRCRKYCSSDEDSDTCIHGSA
SUV3_YEAST   -----------------VVAFSKKKILDLKLKIEKDTNLKVAVIYGS--------LPPET
                                * :. .*: *  .:::... . .  * *        :  .:
Prim.cons.   LSADTVELIERMDRLAEKQATASMSIVALPSSFQESNSSDRCRKYCSSDEDSDTCIHGSA

                   1330      1340      1350      1360      1370      1380
                      |         |         |         |         |         |
YRF1_YEAST   NASTNATTNSSTNATTTASTNVRTSATTTASINVRTSAITTESTNSSTNATTTASTNVRT
YRF2_YEAST   NASTNATTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRT
YRF3_YEAST   NASTNATTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRT
YRF4_YEAST   NASTNATTNSSTNATTTASTNVRTSATTTASINVRTSAITTESTNSSTNATTTASTNVRT
YRF6_YEAST   NASTNATTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRT
SUV3_YEAST   RVQQAALFNNGEYDIMVASDAIGMGLN-----------LSIDRVVFTTNMKYNGEELMEM
             ...  *  *..     .**  :  . .            : : .  :** . ...  :. 
Prim.cons.   NASTNATTNSSTNATTTASTNVRTSATTTASINVRTSATTTESTNSSTNATTTASTNVRT

                   1390      1400      1410      1420      1430      1440
                      |         |         |         |         |         |
YRF1_YEAST   SATTTASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSST
YRF2_YEAST   SATTTASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSST
YRF3_YEAST   SATTTASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSST
YRF4_YEAST   SATTTASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSST
YRF6_YEAST   SATTTASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSST
SUV3_YEAST   TSSQIKQIGGRAGRFKSRSASGGVPQGFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTD
             :::   .*. *:.  .:.*:.....     * :*:.  :. :: :: ..  .** * .: 
Prim.cons.   SATTTASINVRTSATTTESTNSNTSATTTESTDSNTSATTTESTDSNTSATTTASTNSST

                   1450      1460      1470      1480      1490      1500
                      |         |         |         |         |         |
YRF1_YEAST   NATTTASTNSSTNATTTESTNASAKEDANKDGNAEDNRFHPVTDINKESYKRKGSQMVLL
YRF2_YEAST   NATTTASTNSSTNATTTESTNASAKEDANKDGNAEDNRFHPVTDINKESYKRKGSQMVLL
YRF3_YEAST   NATTTASTNSSTNATTTESTNASAKEDANKDGNAEDNRFHPVTDINKESYKRKGSQMVLL
YRF4_YEAST   NATTTASTNSSTNATTTESTNASAKEDANKDGNAEDNRFHPVTDINKESYKRKGSQMVLL
YRF6_YEAST   NATTTASTNSSTNATTTESTNASAKEDANKDGNAEDNRFHPVTDINKESYKRKGSQMVLL
SUV3_YEAST   EICAQLMTQFPPGTPTSVLLQT-ISDELE----------------------KSSDNLFTL
             :  :   *: ...:.*:   ::  .:: :                      :...::. *
Prim.cons.   NATTTASTNSSTNATTTESTNASAKEDANKDGNAEDNRFHPVTDINKESYKRKGSQMVLL

                   1510      1520      1530      1540      1550      1560
                      |         |         |         |         |         |
YRF1_YEAST   ERKKLKAQFPNTSENMNVLQFLGFRSDEIKHLFLYGIDVYFCPEGVFTQYGLCKGCQKMF
YRF2_YEAST   ERKKLKAQFPNTSENMNVLQFLGFRSDEIKHLFLYGIDVYFCPEGVFTQYGLCKGCQKMF
YRF3_YEAST   ERKKLKAQFPNTSENMNVLQFLGFRSDEIKHLFLYGIDVYFCPEGVFTQYGLCKGCQKMF
YRF4_YEAST   ERKKLKAQFPNTSENMNVLQFLGFRSDEIKHLFLYGIDVYFCPEGVFTQYGLCKGCQKMF
YRF6_YEAST   ERKKLKAQFPNTSENMNVLQFLGFRSDEIKHLFLYGIDVYFCPEGVFTQYGLCKGCQKMF
SUV3_YEAST   SDLKSKLKVIGLFEHMEDIP-------------------FF-------------------
             .  * * :. .  *:*: :                    :*                   
Prim.cons.   ERKKLKAQFPNTSENMNVLQFLGFRSDEIKHLFLYGIDVYFCPEGVFTQYGLCKGCQKMF

                   1570      1580      1590      1600      1610      1620
                      |         |         |         |         |         |
YRF1_YEAST   ELCVCWAGQKVSYRRMAWEALAVERMLRNDEEYKEYLEDIEPYHGDPVGYLKYFSVKRGE
YRF2_YEAST   ELCVCWAGQKVSYRRMAWEALAVERMLRNDEEYKEYLEDIEPYHGDPVGYLKYFSVKRGE
YRF3_YEAST   ELCVCWAGQKVSYRRMAWEALAVERMLRNDEEYKEYLEDIEPYHGDPVGYLKYFSVKRGE
YRF4_YEAST   ELCVCWAGQKVSYRRMAWEALAVERMLRNDEEYKEYLEDIEPYHGDPVGYLKYFSVKRGE
YRF6_YEAST   ELCVCWAGQKVSYRRMAWEALAVERMLRNDEEYKEYLEDIEPYHGDPVGYLKFFSVKRGE
SUV3_YEAST   ------------DK-LKLSNAPVKDMPMVTKAFTKFCETIAKRH-----------T-RGL
                          : :  .  .*: *    : :.:: * *   *           . ** 
Prim.cons.   ELCVCWAGQKVSYRRMAWEALAVERMLRNDEEYKEYLEDIEPYHGDPVGYLKYFSVKRGE

                   1630      1640      1650      1660      1670      1680
                      |         |         |         |         |         |
YRF1_YEAST   IYSQIQRNYAWYLAITRRRETISVLDSTRGKQGSQVFRMSGRQIKELYYKVWSNLRESKT
YRF2_YEAST   IYSQIQRNYAWYLAITRRRETISVLDSTRGKQGSQVFRMSGRQIKELYYKVWSNLRESKT
YRF3_YEAST   IYSQIQRNYAWYLAITRRRETISVLDSTRGKQGSQVFRMSGRQIKELYYKVWSNLRESKT
YRF4_YEAST   IYSQIQRNYAWYLAITRRRETISVLDSTRGKQGSQVFRMSGRQIKELYYKVWSNLRESKT
YRF6_YEAST   IYSQIQRNYAWYLAITRRRETISVLDSTRGKQGSQVFRMSGRQIKELYYKVWSNLRESKT
SUV3_YEAST   LSYRLPFNLLDYNCIPNESYSLEVYESLYN-------------IITLYFWLSNRYPN---
             :  ::  *   * .*...  ::.* :*  .             *  **: : ..  :   
Prim.cons.   IYSQIQRNYAWYLAITRRRETISVLDSTRGKQGSQVFRMSGRQIKELYYKVWSNLRESKT

                   1690      1700      1710      1720      1730      1740
                      |         |         |         |         |         |
YRF1_YEAST   EVLQYFLNWDEKKCREEWEAKDDTVFVEALEKVGVFQRLRSMTSAGLQGPQYVKLQFSRH
YRF2_YEAST   EVLQYFLNWDEKKCREEWEAKDDTVFVEALEKVGVFQRLRSMTSAGLQGPQYVKLQFSRH
YRF3_YEAST   EVLQYFLNWDEKKCREEWEAKDDTVFVEALEKVGVFQRLRSMTSAGLQGPQYVKLQFSRH
YRF4_YEAST   EVLQYFLNWDEKKCREEWEAKDDTVFVEALEKVGVFQRLRSMTSAGLQGPQYVKLQFSRH
YRF6_YEAST   EVLQYFLNWDEKKCREEWEAKDDTVFVEALEKVGVFQRLRSMTSAGLQGPQYVKLQFSRH
SUV3_YEAST   ----YFIDMES--------AKDLKYFCEMI----IFEKLDRLKKN-----PYAHKPFGST
                 **:: :.        *** . * * :    :*::*  :..       *.:  *.  
Prim.cons.   EVLQYFLNWDEKKCREEWEAKDDTVFVEALEKVGVFQRLRSMTSAGLQGPQYVKLQFSRH

                   1750      1760      1770      1780      1790      1800
                      |         |         |         |         |         |
YRF1_YEAST   HRQLRSRYELSLGMHLRDQLALGVTPSKVPHWTAFLSMLIGLFYNKTFRQKLEYLLEQIS
YRF2_YEAST   HRQLRSRYELSLGMHLRDQLALGVTPSKVPHWTAFLSMLIGLFCNKTFRQKLEYLLEQIS
YRF3_YEAST   HRQLRSRYELSLGMHLRDQLALGVTPSKVPHWTAFLSMLIGLFCNKTFRQKLEYLLEQIS
YRF4_YEAST   HRQLRSRYELSLGMHLRDQLALGVTPSKVPHWTAFLSMLIGLFYNKTFRQKLEYLLEQIS
YRF6_YEAST   HRQLRSRYELSLGMHLRDQLALGVTPSKVPHWTAFLSMLIGLFCNKTFRQKLEYLLEQIS
SUV3_YEAST   RGHLSS-------S--RRRLRT--------------------------------------
             : :* *          * :*                                        
Prim.cons.   HRQLRSRYELSLGMHLRDQLALGVTPSKVPHWTAFLSMLIGLFCNKTFRQKLEYLLEQIS

                   1810      1820      1830      1840      1850      1860
                      |         |         |         |         |         |
YRF1_YEAST   EVWLLPHWLDLANVEVLAADNTRVPLYMLMVAVHKELDSDDVPDGRFDIILLCRDSSREV
YRF2_YEAST   EVWLLPHWLDLANVEVLAADNTRVPLYMLMVAVHKELDSDDVPDGRFD-ILLCRDSSREV
YRF3_YEAST   EVWLLPHWLDLANVEVLAADNTRVPLYMLMVAVHKELDSDDVPDGRFD-ILLCRDSSREV
YRF4_YEAST   EVWLLPHWLDLANVEVLAADNTRVPLYMLMVAVHKELDSDDVPDGRFDIILLCRDSSREV
YRF6_YEAST   EVWLLPHWLDLANVEVLAADNTRVPLYMLMVAVHKELDSDDVPDGRFD-ILLCRDSSREV
SUV3_YEAST   ------------------------------------------------------------
                                                                         
Prim.cons.   EVWLLPHWLDLANVEVLAADNTRVPLYMLMVAVHKELDSDDVPDGRFDIILLCRDSSREV

             
             
YRF1_YEAST   GE
YRF2_YEAST   GE
YRF3_YEAST   GE
YRF4_YEAST   GE
YRF6_YEAST   GE
SUV3_YEAST   --
                                                                         
Prim.cons.   GE

Alignment data :
Alignment length : 1862
Identity (*) : 136 is 7.30 %
Strongly similar (:) : 177 is 9.51 %
Weakly similar (.) : 139 is 7.47 %
Different : 1410 is 75.73 %
Sequence 0001 : YRF1_YEAST ( 1796 residues).
Sequence 0002 : YRF2_YEAST ( 1681 residues).
Sequence 0003 : YRF3_YEAST ( 1859 residues).
Sequence 0004 : YRF4_YEAST ( 1382 residues).
Sequence 0005 : YRF6_YEAST ( 1859 residues).
Sequence 0006 : SUV3_YEAST ( 737 residues).

CLUSTALW options used :
endgaps=1
gapdist=8
gapext=0.2
gapopen=10.0
hgapresidues=GPSNDQERK
ktuple=1
matrix=gonnet
maxdiv=30
outorder=input
pairgap=3
score=percent
topdiags=5
type=PROTEIN
window=5

Result files (text) :
CLUSTALW

Garnier parameters

Auto calculated
Decision constants HelixSheetTurnCoil
Return

PREDATOR parameters

Secondary structure data
Return

SOPM parameters

Number of conformational states
Similarity threshold : Window width :
Return

SOPMA parameters

Number of conformational states
Similarity threshold : Window width :
Return

User : public@134.206.11.80. Last modification time : Mon Nov 3 12:07:06 2003. Current time : Mon Nov 3 12:07:06 2003 This service is supported by Ministere de la recherche (ACC-SV13), CNRS (IMABIO, COMI, GENOME) and Région Rhône-Alpes (Programme EMERGENCE) . Comments.