########################################
# Program:  needle
# Rundate:  Wed Feb 12 10:56:42 2003
# Align_format: srspair
# Report_file: /ebi/extserv/old-work/277611045047399.needle.res
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: H.pylori
# 2: S.aureus
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 366
# Identity:     212/366 (57.9%)
# Similarity:   212/366 (57.9%)
# Gaps:          96/366 (26.2%)
# Score: 547.5
# 
#
#=======================================

H.pylori           1 atgagtcactatattg---aattaactgaagaaaattttgaaagcaccat     47
                     ||  |.||    ||.|   ||.||||.||.|.|.||||||        ||
S.aureus           1 at--ggca----atcgtaaaagtaacagatgcagattttg--------at     36

H.pylori          48 taaaaa--ag----gggttgcgt-----tagtggatttttgggcaccatg     86
                     |.||||  ||    .|||   ||     ||||.||||||||||||.||||
S.aureus          37 tcaaaagtagaatctggt---gtacaactagtagatttttgggcaacatg     83

H.pylori          87 gtgtggtccttgtaagatgctatcccctgtgatt-gatgaattagctagc    135
                     |||||||||.|||||.|||.|..|.||.|| ||| ||.|||||||| |||
S.aureus          84 gtgtggtccatgtaaaatgatcgctccggt-attagaagaattagc-agc    131

H.pylori         136 -gaatatgaaggtaaggctaagatttgtaaagttaataccgatgagcaag    184
                      ||.|||||||||||.|||.|.|||| ||||.|||     ||||...|.|
S.aureus         132 tgactatgaaggtaaagctgacattt-taaaatta-----gatgttgatg    175

H.pylori         185 aagaattgagc-------gcgaaatttggtattaggagcattcctacgct    227
                     || |||..|.|       ||.||||.||...|.|.|||.|||||.|  |.
S.aureus         176 aa-aatccatcaactgcagctaaatatgaagtgatgagtattccaa--ca    222

H.pylori         228 tttat--tcacaaaagatggcgaagttgtccatcagttg--------gtg    267
                     ||.||  ||...|||||.|        |||.|.||||||        ||.
S.aureus         223 ttaatcgtctttaaagacg--------gtcaaccagttgataaagttgtt    264

H.pylori         268 ggcgtgcaaactaaagtcgctttaaaa--gagcaattgaacaagctttta    315
                     ||..|.|||.|.||||       ||||  .|||   ||||    .|||||
S.aureus         265 ggtttccaaccaaaag-------aaaacttagc---tgaa----gtttta    300

H.pylori         316 ggctag              321
                      |.||.          
S.aureus         301 -gataaacatttataa    315


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