SignalP V2.0 World Wide Web Server

SignalP predictions

Using neural networks (NN) and hidden Markov models (HMM) trained on Gram-negative bacteria 


>aceA
SignalP-NN result:

# data 

>aceA                  length = 70
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    30       0.261   0.50   NO
  max. Y     9       0.046   0.32   NO
  max. S    52       0.211   0.90   NO
  mean S     1-8     0.142   0.44   NO
SignalP-HMM result:

# data 

>aceA
Prediction: Non-secretory protein
Signal peptide probability: 0.000
Max cleavage site probability: 0.000 between pos. -1 and  0


>PutP
SignalP-NN result:

# data 

>PutP                  length = 70
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    54       0.373   0.50   NO
  max. Y    28       0.424   0.32   YES
  max. S    16       0.951   0.90   YES
  mean S     1-27    0.743   0.44   YES
# Most likely cleavage site between pos. 27 and 28: AYR-AT
SignalP-HMM result:

# data 

>PutP
Prediction: Signal peptide
Signal peptide probability: 0.694
Max cleavage site probability: 0.667 between pos. 27 and 28


>clone53
SignalP-NN result:

# data 

>clone53               length = 70
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    50       0.193   0.50   NO
  max. Y    50       0.188   0.32   NO
  max. S     2       0.803   0.90   NO
  mean S     1-49    0.189   0.44   NO
SignalP-HMM result:

# data 

>clone53
Prediction: Non-secretory protein
Signal peptide probability: 0.022
Max cleavage site probability: 0.015 between pos. 16 and 17


>clone47
SignalP-NN result:

# data 

>clone47               length = 70
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    18       0.086   0.50   NO
  max. Y    14       0.079   0.32   NO
  max. S     6       0.497   0.90   NO
  mean S     1-13    0.270   0.44   NO
SignalP-HMM result:

# data 

>clone47
Prediction: Non-secretory protein
Signal peptide probability: 0.006
Max cleavage site probability: 0.004 between pos. 24 and 25


>bino10
SignalP-NN result:

# data 

>bino10                length = 70
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    37       0.240   0.50   NO
  max. Y    37       0.380   0.32   YES
  max. S     7       0.959   0.90   YES
  mean S     1-36    0.818   0.44   YES
# Most likely cleavage site between pos. 36 and 37: AIT-SE
SignalP-HMM result:

# data 

>bino10
Prediction: Signal peptide
Signal peptide probability: 0.998
Max cleavage site probability: 0.460 between pos. 33 and 34
# gnuplot script for making the plot(s)
When using results from this server, please cite: If you specifically use the SignalP-HMM output, please also cite: