Peer-reviewed conferences

[1] A. Gambin, S. Lasota, M. Startek, M. Sykulski, L. Noé, and G. Kucherov, “Subset seed extension to Protein BLAST,” in Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2011), January 26-29 2011, Rome (Italy), pp. 149-158, SciTePress Digital Library, January 2011. [ bib | DOI | hal | .pdf ]
[2] L. Noé, M. Gîrdea, and G. Kucherov, “Seed design framework for mapping SOLiD reads,” in Proceedings of the 14th Annual International Conference on Research in Computational Molecular Biology (RECOMB), April 25-28, 2010, Lisbon (Portugal) (B. Berger, ed.), vol. 6044 of Lecture Notes in Computer Science, pp. 384-396, Springer, April 2010. [ bib | DOI | arXiv | hal | http | .ps.gz | .pdf ]
[3] M. Gîrdea, G. Kucherov, and L. Noé, “Back-translation for discovering distant protein homologies,” in Proceedings of the 9th International Workshop in Algorithms in Bioinformatics (WABI), Philadelphia (USA) (S. Salzberg and T. Warnow, eds.), vol. 5724 of Lecture Notes in Computer Science, pp. 108-120, Springer, September 2009. [ bib | DOI | arXiv | hal | http | .ps.gz | .pdf ]
[4] R. Uricaru, C. Michotey, L. Noé, H. Chiapello, and É. Rivals, “Improved sensitivity and reliability of anchor based genome alignment,” in Proceedings of the 10th Open Days in Biology, Computer Science and Mathematics (JOBIM), June 9-11, 2009, Nantes (France), pp. 31-36, June 2009. [ bib | hal | .pdf ]
[5] M. A. Roytberg, A. Gambin, L. Noé, S. Lasota, E. Furletova, E. Szczurek, and G. Kucherov, “Efficient seeding techniques for protein similarity search,” in Bioinformatics Research and Development, Proceedings of the 2nd International Conference BIRD 2008, Vienna (Austria), July 7-9, 2008 (M. Elloumi, J. Küng, M. Linial, R. Murphy, K. Schneider, and C. Toma, eds.), vol. 13 of Communications in Computer and Information Science, pp. 466-478, Springer, July 2008. [ bib | DOI | arXiv | hal | http | .ps.gz | .pdf ]
[6] G. Kucherov, L. Noé, and M. A. Roytberg, “Subset seed automaton,” in Proceedings of the 12th International Conference on Implementation and Application of Automata (CIAA), July 16-18, 2007, Prague (Czech Republic) (J. Holub and J. Zdarek, eds.), vol. 4783 of Lecture Notes in Computer Science, pp. 180-191, Springer, July 2007. [ bib | DOI | hal | http | .ps.gz | .pdf ]
[7] P. Peterlongo, L. Noé, D. Lavenier, G. Georges, J. Jacques, G. Kucherov, and M. Giraud, “Protein similarity search with subset seeds on a dedicated reconfigurable hardware,” in Proceedings of the 2nd Workshop on Parallel Bio-Computing (PBC), September 9-12, 2007 Gdansk (Poland) (R. Wyrzykowski, J. Dongarra, K. Karczewski, and J. Wasniewski, eds.), vol. 4967 of Lecture Notes in Computer Science, pp. 1240-1248, Springer, September 2008. [ bib | DOI | hal | http | .pdf ]
[8] G. Kucherov, L. Noé, and M. A. Roytberg, “A unifying framework for seed sensitivity and its application to subset seeds,” in Proceedings of the 5th International Workshop on Algorithms in Bioinformatics (WABI), October 3-6, 2005, Mallorca (Spain) (R. Casadio and G. Myers, eds.), vol. 3692 of Lecture Notes in Computer Science, pp. 251-263, Springer, October 2005. [ bib | DOI | arXiv | hal | http | .ps.gz | .pdf ]
[9] G. Kucherov, L. Noé, and M. A. Roytberg, “Multi-seed lossless filtration,” in Proceedings of the 15th Annual Combinatorial Pattern Matching Symposium (CPM), July 5-7, 2004, Istanbul (Turkey) (S. Sahinalp, S. Muthukrishnan, and U. Dogrusoz, eds.), vol. 3109 of Lecture Notes in Computer Science, pp. 297-310, Springer, July 2004. [ bib | DOI | hal | http | .ps.gz | .pdf ]
[10] G. Kucherov, L. Noé, and Y. Ponty, “Estimating seed sensitivity on homogeneous alignments,” in Proceedings of the IEEE 4th Symposium on Bioinformatics and Bioengineering (BIBE), May 19-21, 2004, Taichung (Taiwan), pp. 387-394, IEEE Computer Society Press, April 2004. [ bib | DOI | arXiv | hal | http | .ps.gz | .pdf ]
[11] L. Noé and G. Kucherov, “Improved hit criteria for DNA local alignment,” in Proceedings of the 5th Open Days in Biology, Computer Science and Mathematics (JOBIM), June 28-30, 2004, Montréal (Canada), June 2004. [ bib | hal | .ps.gz | .pdf ]

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