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Revues internationales avec comité de lecture

S. Caboche, M. Pupin, V. Leclère, Ph. Jacques, and G. Kucherov.
Structural pattern matching of nonribosomal peptides.
BMC Structural Biology, 9:15, 2009. DOI

Ségolène Caboche, Maude Pupin, Valérie Leclère, Arnaud Fontaine, Philippe Jacques, and Gregory Kucherov.
NORINE: a database of nonribosomal peptides. Nucleic Acids Research, Vol. 36, Database issue D326-D331, 2008.
DOI

G. Didier, L. Debomy, M. Pupin, M. Zhang, A. Grossmann, C. Devauchelle, and I. Laprevotte.
Comparing sequences without using alignments: application to HIV/SIV subtyping.
BMC Bioinformatics, 8(1), 2007.
DOI

Local decoding of sequences and alignment-free comparison.
Gilles Didier, Ivan Laprevotte, Maude Pupin and Alain Henaut
Journal of Computational Biology
Oct 2006, Vol. 13, No. 8: 1465-1476
DOI, PubMed

A revised annotation and comparative analysis of Helicobacter pylori genomes.
Boneca IG, de Reuse H, Epinat JC, Pupin M, Labigne A, Moszer I.
Nucleic Acids Res. 2003 Mar 15, 31(6):1704-14.
PubMed

HIV-1 and HIV-2 LTR Nucleotide Sequences: Assessment of the Alignment by N-block Presentation, "Retroviral Signatures" of Overrepeated Oligonucleotides, and a Probable Important Role of Scrambled Stepwise Duplications/Deletions in Molecular Evolution.
Laprevotte I, Pupin M, Coward E, Didier G, Terzian C, Devauchelle C, Henaut A
Mol Biol Evol 2001, 18:1231-1245.
PubMed

Detecting localized repeats in genomic sequences: a new strategy and its application to B. subtilis and A. thaliana sequences.
M. Klaerr-Blanchard, H. Chiapello, E. Coward
Computers and Chemistry 2000, 24 (1): 57-70
PubMed, PDF

The complete genome sequence of the gram-positive bacterium Bacillus subtilis.
F. Kunst, et al.
Nature 1997, 390 (6657): 249-256
PubMed



Revue nationale avec comité de lecture

Codages de séquences
Gilles Didier, Ivan Laprevotte, Maude Pupin
Gazette des Mathématiciens - n°92, 2002, p. 27-39
PDF



Chapitre d'un livre

In silico genome analysis
E. Rocha, I. Moszer, M. Klaerr-Blanchard, A. Sekowska, A. Viari and A. Danchin
Functional analysis of bacterial genes : a practical manual
Edited by W. Schuman, S. D. Ehrlick and N. Ogasawara in june 2001
John Wiley & sons, Ltd publishers