Mikaël
Salson
Associate professor of computer science
mikael.salson@lifl.fr
+33 3 28 77 85 54
Positions
Since September 2010, I am part of the bioinformatics research group
Bonsai
(
LIFL
laboratory –
Université Lille 1
and
CNRS
;
Inria Lille - Nord Europe
). You could find me wandering around
office 204 in the M3 extension building
.
I prepared my PhD thesis at the
university of Rouen
in the
TIBS
group of the
LITIS
laboratory. I defended late 2009
Teaching
2010–2013
Introduction to programming
(First year bachelor)
Coding and information theory
(Second year bachelor –
MIMP
)
C programming
(Third year bachelor –
MIMP
)
2011–2013
Bioinformatics (First year master – Biology and biotechnology)
Research
Research interests
My research interests are mainly (but not restricted to) the following ones
Bioinformatics
Algorithms for processing read sequences from
high-throughput sequencing technologies
. Mutation and variation detections.
Searching
microRNA
targets (microRNAs are small non-protein coding RNAs, that have a regulatory role).
Stringology
Dynamic compressed text indexes (
suffix tree
,
suffix array
,
Burrows-Wheeler transform
)
Range minimum query
Publications
See my
publication list
Talks given
See the
list of my talks
Softwares
CRAC, a RNA-seq read analysis tool: for detecting splicing junctions (either alternativ or not), fusion gene or transcripts, point mutations (substitutions, insertions, deletions).
GkArrays :A C++ library for indexing reads produced by high-throughput sequencers
A dynamic and compressed full-text index implementation
Contact
Université Lille 1 – LIFL
Bâtiment M3 – Cité scientifique
59655 Villeneuve d'Ascq Cedex - France
+33 3 28 77 85 54
