Publications
Peer-reviewed journals
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2013
- CRAC: an integrated approach to the analysis of RNA-seq reads (N. Philippe, M. Salson, T. Commes, É. Rivals), In Genome Biology, volume 14, 2013.
[bib] [pdf] [doi]
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2011
- Querying large read collections in main memory: a versatile data structure (N. Philippe, M. Salson, T. Lecroq, M. Léonard, T. Commes, É. Rivals), In BMC Bioinformatics, 2011.
[bib] [pdf] [doi]
- On the number of elements to reorder when updating a suffix array (M. Léonard, L. Mouchard, M. Salson), In Journal of Discrete Algorithms, 2011.
[bib] [pdf] [doi]
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2010
- Dynamic Extended Suffix Array (M. Salson, T. Lecroq, M. Léonard, L. Mouchard), In Journal of Discrete Algorithms, volume 8, 2010.
[bib] [pdf] [doi]
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2009
- A Four-Stage Algorithm for Updating a Burrows-Wheeler Transform (M. Salson, T. Lecroq, M. Léonard, L. Mouchard), In Theor. Comput. Sci., volume 410, 2009.
[bib] [pdf] [doi]
Peer-reviewed conferences
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2008
- Dynamic Burrows-Wheeler Transform (M. Salson, T. Lecroq, M. Léonard, L. Mouchard), In Proc. of Prague Stringology Conference (PSC), 2008.
[bib] [pdf]
Miscellaneous
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2009
- Structures d'indexation compressées et dynamiques pour le texte (M. Salson), PhD thesis, Université de Rouen, 2009.
[bib] [pdf]
