Talks given

Peer-reviewed conferences

2014
Lossless seeds for searching short patterns with high error rates (C. Vroland, M. Salson, H. Touzet), Talk given by Christophe Vroland, International Workshop On Combinatorial Algorithms (IWOCA), 2014. (Talk given by Christophe Vroland) [bib] [pdf]
2008
Dynamic Burrows-Wheeler Transform (M. Salson, T. Lecroq, M. Léonard, L. Mouchard), Prague Stringology Conference (PSC 2008), Prague, Czech Republic, 2008. [bib] [pdf]
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Workshops

2016
Vidjil, a platform for the interactive analysis of immune repertoires (M. Duez, M. Giraud, R. Herbert, T. Rocher, M. Salson, F. Thonier), 2016. [bib] [pdf]
2015url=talks/010seed.pdf
A seeding framework for lossless filtering for the approximate pattern matching problem (C. Vroland, M. Salson, H. Touzet), SeqBio 2015, 2015url=talks/010seed.pdf. [bib]
2013
CRAC, a software for analyzing RNA-seq reads (N. Philippe, M. Salson, T. Commes, E. Rivals), JOBIM 2013 (french bioinformatics conference), 2013. [bib] [pdf]
2011
Indexing a large set of reads (N. Philippe, M. Salson, T. Lecroq, M. Léonard, T. Commes, É. Rivals), Workshop algorithme, combinatoire du texte et applications en bio-informatique (SeqBi 2011), Rennes, 2011. [bib] [pdf]
2010
Average Complexity for Updating a Suffix Array (M. Léonard, L. Mouchard, M. Salson), London Stringology Days and London Algorithmic Workshop (LSD-LAW 2010), 2010. [bib] [pdf]
Sliding a Suffix Array along a Text (A. Al-Hafeedh, L. Mouchard, M. Salson, B. Smyth), London Stringology Days and London Algorithmic Workshop (LSD-LAW 2010), 2010. [bib] [pdf]
Coût de la mise à jour d'une table des suffixes (M. Léonard, L. Mouchard, M. Salson), Workshop algorithmique, combinatoire du texte et applications en bio-informatique (GTSEQ 2010), Montpellier, 2010. [bib] [pdf]
2009
Dynamic Suffix Array with experiments and a specific emphasis on LCP arrays (M. Salson, T. Lecroq, M. Léonard, L. Mouchard), Stringology Research Workshop, Tel-Aviv, Israel, 2009. [bib] [pdf]
Dynamic Burrows-Wheeler Transform (M. Salson, T. Lecroq, M. Léonard, L. Mouchard), Talk given by Laurent Mouchard, Stringology Research Workshop, Tel-Aviv, Israel, 2009. (Talk given by Laurent Mouchard) [bib] [pdf]
Dynamic Extended Suffix Arrays (M. Salson, M. Léonard, T. Lecroq), London Stringology Days and London Algorithmic Workshop (LSD-LAW 2009), 2009. [bib] [pdf]
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Miscellaneous

2017
To map or not to map? (M. Salson), Formation RNA-Seq Bilille, 2017. [bib] [pdf]
2012
Alignement, la spécificité d'abord ! (M. Salson), Réseau régional d’ingénieurs en bioinformatique de Lille, PPF bioinformatique, 2012. [bib] [pdf]
Étude par NGS des réarrangements V(D)J comme marqueurs de la maladie résiduelle (M. Salson), Le séquençage de nouvelle génération dans le cancéropôle nord-ouest : évolution, résultats, projets, 2012. [bib] [pdf]
2011
Transformée de Burrows-Wheeler et mapping de données RNA-Seq (M. Salson), Journée de l'ANR Mappi, 2011. [bib] [pdf]
Indexer des fragments d'ADN (N. Philippe, M. Salson, T. Lecroq, M. Léonard, T. Commes, É. Rivals), Journées au vert, 2011. [bib] [pdf]
2010
Comment chercher vite et bien dans un texte ? (M. Salson), Journées du CIES, 2010. [bib] [pdf]
2009
Structures d'indexation compressées et dynamiques pour le texte (M. Salson), PhD defense, university of Rouen, 2009. [bib] [pdf]
Applications de la transformée de Burrows-Wheeler (M. Salson, T. Lecroq, M. Léonard, L. Mouchard), Journée de l'école doctorale SPMII, 2009. [bib] [pdf]
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